Hello, haukex,
Thank you so much for your great help!
administrator@ACB-HuangLab-Ubuntu:~/homer$ perl configureHomer.pl -ins
+tall
Current base directory for HOMER is /home/administrator/homer/./
--2019-06-30 08:39:34-- http://homer.ucsd.edu/homer/update.txt
Resolving homer.ucsd.edu (homer.ucsd.edu)... 169.228.63.226
Connecting to homer.ucsd.edu (homer.ucsd.edu)|169.228.63.226|:80... co
+nnected.
HTTP request sent, awaiting response... 200 OK
Length: 16187 (16K) [text/plain]
Saving to: ‘/home/administrator/homer/.//update.txt’
100%[================================================================>
+] 16,187 --.-K/s in 0.05s
2019-06-30 08:39:34 (293 KB/s) - ‘/home/administrator/homer/.//update.
+txt’ saved [16187/16187]
Updating Settings...
`wget -O 0.133731155962781.tmp http://homer.ucsd.edu/homer/configureHo
+mer.pl`;
--2019-06-30 08:39:34-- http://homer.ucsd.edu/homer/configureHomer.pl
Resolving homer.ucsd.edu (homer.ucsd.edu)... 169.228.63.226
Connecting to homer.ucsd.edu (homer.ucsd.edu)|169.228.63.226|:80... co
+nnected.
HTTP request sent, awaiting response... 200 OK
Length: 26485 (26K) [application/x-perl]
Saving to: ‘0.133731155962781.tmp’
100%[================================================================>
+] 26,485 --.-K/s in 0.06s
2019-06-30 08:39:34 (467 KB/s) - ‘0.133731155962781.tmp’ saved [26485/
+26485]
configureHomer.pl script is up-to-date
Packages to Install...
homer ->
Checking for standard utilities and 3rd party software:
(Note: seqlogo, gs, and blat no longer required)
Checking for wget... /usr/bin/wget
Checking for cut... /usr/bin/cut
Checking for gcc... /usr/bin/gcc
Checking for g++... /usr/bin/g++
Checking for zip... /usr/bin/zip
Checking for unzip... /usr/bin/unzip
Checking for make... /usr/bin/make
Checking for tar... /bin/tar
Checking for gunzip... /bin/gunzip
Checking for gzip... /bin/gzip
All auxilary programs found.
Installing: homer
Downloading...
--2019-06-30 08:39:34-- http://homer.ucsd.edu/homer/data/software/hom
+er.v4.10.4.zip
Resolving homer.ucsd.edu (homer.ucsd.edu)... 169.228.63.226
Connecting to homer.ucsd.edu (homer.ucsd.edu)|169.228.63.226|:80... co
+nnected.
HTTP request sent, awaiting response... 200 OK
Length: 35758069 (34M) [application/zip]
Saving to: ‘homer.package.zip’
100%[================================================================>
+] 35,758,069 31.6MB/s in 1.1s
2019-06-30 08:39:36 (31.6 MB/s) - ‘homer.package.zip’ saved [35758069/
+35758069]
Unzipping...
Finished Installing homer
administrator@ACB-HuangLab-Ubuntu:~/homer$ perl configureHomer.pl -big
+WigUrl
Current base directory for HOMER is /home/administrator/homer/./
Updating Settings...
Use of uninitialized value $val in concatenation (.) or string at conf
+igureHomer.pl line 599.
administrator@ACB-HuangLab-Ubuntu:~/homer$ perl configureHomer.pl -big
+WigDir
Current base directory for HOMER is /home/administrator/homer/./
Updating Settings...
Use of uninitialized value $val in concatenation (.) or string at conf
+igureHomer.pl line 599.
administrator@ACB-HuangLab-Ubuntu:~/homer$
