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Re^6: Use of uninitialized value in subroutine entry at /home/roarce/perl5/perlbrew/perls/perl-5.28.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 476, <IN> line 8192.

by roarce92 (Acolyte)
on Jul 14, 2020 at 19:15 UTC ( [id://11119316]=note: print w/replies, xml ) Need Help??


in reply to Re^5: Use of uninitialized value in subroutine entry at /home/roarce/perl5/perlbrew/perls/perl-5.28.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 476, <IN> line 8192.
in thread Use of uninitialized value in subroutine entry at /home/roarce/perl5/perlbrew/perls/perl-5.28.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 476, <IN> line 8192.

Sorry for the delay. I could run the Perl module with some files and I was working on that. With anothers I'm having the same problem of this issue. I add your suggestion for the EDIT part in 'Finder.pm' file and I recieved the following error comments.

Global symbol "@hd_matrix" requires explicit package name (did you for +get to declare "my @hd_matrix"?) at /home/roarce/perl5/perlbrew/perls +/perl-5.28.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 477. Global symbol "$oligo_indice" requires explicit package name (did you +forget to declare "my $oligo_indice"?) at /home/roarce/perl5/perlbrew +/perls/perl-5.28.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 482. Global symbol "$oligo_indice" requires explicit package name (did you +forget to declare "my $oligo_indice"?) at /home/roarce/perl5/perlbrew +/perls/perl-5.28.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 483. Global symbol "@hd_sum" requires explicit package name (did you forget + to declare "my @hd_sum"?) at /home/roarce/perl5/perlbrew/perls/perl- +5.28.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 486. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 488. Global symbol "$n_bkgd_seq" requires explicit package name (did you fo +rget to declare "my $n_bkgd_seq"?) at /home/roarce/perl5/perlbrew/per +ls/perl-5.28.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 490. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 492. Global symbol "@hd_sum" requires explicit package name (did you forget + to declare "my @hd_sum"?) at /home/roarce/perl5/perlbrew/perls/perl- +5.28.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 493. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 502. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 503. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 504. Global symbol "@hd_sum" requires explicit package name (did you forget + to declare "my @hd_sum"?) at /home/roarce/perl5/perlbrew/perls/perl- +5.28.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 504. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 505. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 506. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 507. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 509. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 514. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 515. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 516. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 517. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 519. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 522. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 530. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 531. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 532. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 533. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 534. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 535. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 536. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 537. Global symbol "$self" requires explicit package name (did you forget t +o declare "my $self"?) at /home/roarce/perl5/perlbrew/perls/perl-5.28 +.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 538. Unmatched right curly bracket at /home/roarce/perl5/perlbrew/perls/per +l-5.28.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 539, at end of li +ne /home/roarce/perl5/perlbrew/perls/perl-5.28.0/lib/site_perl/5.28.0/See +der/Finder.pm has too many errors. Compilation failed in require at - line 1. BEGIN failed--compilation aborted at - line 1.

I really appreciate your help, thanks in advance. Rocío

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Re^7: Use of uninitialized value in subroutine entry at /home/roarce/perl5/perlbrew/perls/perl-5.28.0/lib/site_perl/5.28.0/Seeder/Finder.pm line 476, <IN> line 8192.
by bliako (Monsignor) on Jul 15, 2020 at 15:42 UTC

    Hi Rocio,

    there must be some tiny bug like a missing bracket somewhere? Anyway, it is trivial debugging code. But right now I can't remember what was the problem and I will not start looking at it again. Perhaps another Monk here can help you or the author of said module. If you are willing to share the data causing the problem it will be better. If you can't find anyone to help you, you can post an offer to https://jobs.perl.org

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