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install Bio::DB::BigFile

by yueli711 (Sexton)
on Aug 15, 2021 at 09:31 UTC ( [id://11135847]=perlquestion: print w/replies, xml ) Need Help??

yueli711 has asked for the wisdom of the Perl Monks concerning the following question:

Hello, I tried to install Bio::DB::BigFile in my Ubuntu 18.04.5 LTS \n \l. I always have problem of "Please enter the location of Kent source tree". Thank you in advance for your great help! Best Regards, Yue

Inspiron-3670:~$ sudo cpanm Bio::DB::BigFile --force --> Working on Bio::DB::BigFile Fetching http://www.cpan.org/authors/id/L/LD/LDS/Bio-BigFile-1.07.tar. +gz ... OK Configuring Bio-BigFile-1.07 ... Please enter the location of Kent sou +rce tree: /Home/kent-335_base/src Try again, or hit <enter> to cancel: /Home/kent-335_base Try again, or hit <enter> to cancel: FAIL ! Timed out (> 60s). Use --verbose to retry. ! Configure failed for Bio-BigFile-1.07. See /home/jing/.cpanm/work/16 +29019251.9869/build.log for details.

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Re: install Bio::DB::BigFile
by marto (Cardinal) on Aug 15, 2021 at 10:53 UTC

    From the docs:

    "Installation requires a compiled version of Jim Kent's source tree, including the main library, jkweb.a. Please see the README in the Bio::DB::BigFile distribution directory for instructions."

    README explains what you have to do.

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