Perl Data Language is my favorite...;)
you can munge your data with PERL and just use PDL to put togeteher your graphs or you may find PDL's data structures more intuitive and muchmuch more effiecient for operating over large data sets....
you can compile in support for jpeg, gif, png, ps (i'm pretty sure), and, what I find to be the sexiest feature, OpenGL rendering for some slick 3d graphs....you can even animate your graphs and export as mpeg.....
Quite an impressive package, although it is my opinion that the documentation is lacking much important detail...I haven't seen much activity with this project as of late...a pity....
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