Try this:
#! perl -slw
use strict;
local $/ = "\n>";
while( <DATA> ) {
chomp;
my( $label, $data ) = m[\A>?(.*?)\n(.*)$]sm;
$data =~ tr[\n][]d;
printf "%20s : %s\n", $label, $data;
}
=Output
P:\test>junk3
Record 1 : AGTCTAGTCATCATCATAAGATCATCAATCACA
Other Record 1 : ATGAACAGCAGATGAAGAATGGATAG
Record 2 : AGTCTAGTCATCATCATAAGATCATCAATCACA
Other Record 2 : ATGAACAGCAGATGAAGAATGGATAG
=cut
__DATA__
>Record 1
AGTCTAGTCAT
CATCATAAGAT
CATCAATCACA
>Other Record 1
ATGAACAGCAG
ATGAAGAATGG
ATAG
>Record 2
AGTCTAGTCAT
CATCATAAGAT
CATCAATCACA
>Other Record 2
ATGAACAGCAG
ATGAAGAATGG
ATAG
Examine what is said, not who speaks -- Silence betokens consent -- Love the truth but pardon error.
Lingua non convalesco, consenesco et abolesco.
Rule 1 has a caveat! -- Who broke the cabal?
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