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Retrieving Search Results from a Bio::DB::GenBank Queryby Tanalis (Curate) |
on Jun 22, 2004 at 11:05 UTC ( [id://368671]=perlquestion: print w/replies, xml ) | Need Help?? |
Tanalis has asked for the wisdom of the Perl Monks concerning the following question:
Monks,
I am currently making use of the Bio::DB::GenBank module from BioPerl to conduct searches for medical terms across a number of databases in turn. Using the docs as a guide, I have written the following subroutine which should make this possible:
I am encountering problems when trying to extract each sequence object from the stream, however, in that calls to $seqio->next_seq() never seem to return an object. I am certain data is being retrieved from the database (the count of records retrieved and obtained from $query is > 0). Has anyone made use of this module and had a similar problem? If so, can you suggest a way to correct the issue? Thanks in advance, -- Foxcub
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