P:\test>GF n2l3172.dat
000:001 L[ 12] ( 364 23)
000:001 L[ 12] ( 364 23)*
000:001 L[ 12] ( 364 23)*
000:001 L[ 12] ( 364 23)*
000:001 L[ 12] (1102 1008)
000:001 L[ 12] (1124 2290)
000:001 L[ 12] (1506 2529)
000:001 L[ 12] (1506 2529)*
000:001 L[ 12] (1506 2529)*
000:001 L[ 12] (1506 2529)*
000:001 L[ 12] (1859 224)
000:001 L[ 12] (2046 2360)
000:001 L[ 12] (2399 1226)
000:001 L[ 12] (2480 401)
000:001 L[ 12] (2494 540)
000:001 L[ 12] (3023 1102)
Completed in 5.292793
Best match: >1 - >2. 12 characters starting at 364 and 23.
Best match: >1 - >2. 12 characters starting at 364 and 23.*
Best match: >1 - >2. 12 characters starting at 364 and 23.*
Best match: >1 - >2. 12 characters starting at 364 and 23.*
Best match: >1 - >2. 12 characters starting at 1102 and 1008.
Best match: >1 - >2. 12 characters starting at 1124 and 2290.
Best match: >1 - >2. 12 characters starting at 1506 and 2529.
Best match: >1 - >2. 12 characters starting at 1506 and 2529.*
Best match: >1 - >2. 12 characters starting at 1506 and 2529.*
Best match: >1 - >2. 12 characters starting at 1506 and 2529.*
Best match: >1 - >2. 12 characters starting at 1859 and 224.
Best match: >1 - >2. 12 characters starting at 2046 and 2360.
Best match: >1 - >2. 12 characters starting at 2399 and 1226.
Best match: >1 - >2. 12 characters starting at 2480 and 401.
Best match: >1 - >2. 12 characters starting at 2494 and 540.
Best match: >1 - >2. 12 characters starting at 3023 and 1102.
####
P:\test>484593-5 n2l3172.dat
000:001 L[012] ( 364, 23)'CAGGAGCGGGCG'
(1102,1008)'ACAGCCACGAAA'
(1124,2290)'AGCAGGAAGGAG'
(1506,2529)'GCGCGAAGCAAA'
(1859, 224)'AACAGGAAGGGA'
(2046,2360)'CAGAGCCCACAG'
(2399,1226)'GGCGCAACCCGG'
(2480, 401)'GGGGCCGGCAAC'
(2494, 540)'CGCAGCAGAAAC'
(3023,1102)'GGCAGCAAGGGC'
1 trial of n2l3172.dat (132.223ms total), 132.223ms/trial
##
##
P:\test\LCS>type temp
>string 1
AACCAGGGTCATAGGAGCCGGCACTATGATCTCTAGTGTTTTAGGAGTAGTGAACCACCTTCCAGACACGGCAGCCAACATTCCGTCTATCGCCTACTCG
>string 2
TAGCACGGTGATAAGCTACAATTAACGCCATCTCACGCGCGCGAGTGTGTTCTACTACCCATTATATAAGATGAAAATGAACACTAAGGGCTGGGGCCCT
P:\test\LCS>gf temp
000:001 L[ 5] ( 21 81)
000:001 L[ 5] ( 21 81)*
000:001 L[ 5] ( 28 29)
000:001 L[ 5] ( 34 43)
000:001 L[ 5] ( 35 46)
000:001 L[ 5] ( 50 77)
000:001 L[ 5] ( 66 3)
000:001 L[ 5] ( 66 3)*
000:001 L[ 5] ( 93 51)
000:001 L[ 5] ( 93 51)*
Completed in 0.009414
Best match: >string 1 - >string 2. 5 characters starting at 21 and 81.
Best match: >string 1 - >string 2. 5 characters starting at 21 and 81.
Best match: >string 1 - >string 2. 5 characters starting at 28 and 29.
Best match: >string 1 - >string 2. 5 characters starting at 34 and 43.
Best match: >string 1 - >string 2. 5 characters starting at 35 and 46.
Best match: >string 1 - >string 2. 5 characters starting at 50 and 77.
Best match: >string 1 - >string 2. 5 characters starting at 66 and 3.
Best match: >string 1 - >string 2. 5 characters starting at 66 and 3.
Best match: >string 1 - >string 2. 5 characters starting at 93 and 51.
Best match: >string 1 - >string 2. 5 characters starting at 93 and 51.
P:\test\LCS>484593-5 temp
000:001 L[005] ( 21, 81)'CACTA'
( 28, 29)'ATCTC'
( 34, 43)'AGTGT'
( 35, 46)'GTGTT'
( 50, 77)'TGAAC'
( 66, 3)'CACGG'
( 93, 51)'CTACT'
1 trial of temp ( 147us total), 147us/trial
##
##
P:\test\LCS>type temp
>string 1
AAATATCTCGATAATTAGTA
>string 2
TGACTAGATCATATAACCAC
P:\test\LCS>gf temp
000:001 L[ 4] ( 2 10)
000:001 L[ 4] ( 2 10)
000:001 L[ 4] ( 10 12)
Completed in 0.00106
Best match: >string 1 - >string 2. 4 characters starting at 2 and 10.
Best match: >string 1 - >string 2. 4 characters starting at 2 and 10.
Best match: >string 1 - >string 2. 4 characters starting at 10 and 12.
P:\test\LCS>484593-5 temp
000:001 L[004] ( 2, 10)'ATAT'
( 10, 12)'ATAA'
1 trial of temp ( 36us total), 36us/trial