#!/usr/bin/perl -w use strict; my $num_ch = $ARGV[0] or die "must pass the # of chunks $!"; open (FH,"<$ARGV[1]") or die "must pass the file name to make chunks of $!"; my @lines = (); $/ = ">"; while (){ chomp; next if /^$/; # get rid of blank lines push @lines,">$_"; } close FH; my $num_rec = scalar(@lines); print "number of records : $num_rec\n"; #die "Chunks exceed records!!" unless ($num_rec >= $num_ch); sub write_em { my $output = shift()."_chunk.fa"; my $ar_ref = shift; open (QRTR,">$output") or die "Cannot open $output : $!"; print QRTR @$ar_ref; close (QRTR) or die "cannot close $output : $!"; } my $cnt = 0; my $rng = int($num_rec/$num_ch) + ($num_rec%$num_ch ? 1 : 0); for (1..$num_ch) { write_em($_,[@lines[$cnt..($_ == $num_ch ? $#lines : ($cnt+($rng-1)))]]); $cnt += $rng; }