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Re^2: Lower-casing Substrings and Iterating Two Files togetherby neversaint (Deacon) |
on Dec 29, 2008 at 05:32 UTC ( [id://732959]=note: print w/replies, xml ) | Need Help?? |
Dear BrowserUK, Your magical approach is at least 6980x faster than mine! My approach: BrowserUk Perl's approach (modified to handle FASTA): Takes only this much time: This is tested on 12MB dataset, and the breakdown of sequence length is this: Update: These test datasets (full and hardmasked) can be downloaded here.
--- neversaint and everlastingly indebted.......
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