I decided to do it the md5 way. So how would i accomplish this. I have it reading the directorys assign it to an array. Right now I am just printing the md5 hash from each element in the array. How would I assign each item to the array, and then loop though each array and compare each field?

opendir(DIR, $RemoteSubDirectory);
my @rFileCheck = readdir(DIR);
closedir(DIR);

opendir(DIR, $localCpPath);
my @lFileCheck = readdir(DIR);
closedir(DIR);

my $c1;
foreach (@lFileCheck)
{
print md5_base64($lFileCheck[$c1]);
print "\n";
$c1++;
}

my $c2;
foreach (@rFileCheck)
{
print md5_base64($rFileCheck[$c1]);
print "\n";
$c2++;
}
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