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Hi Monks, I am having difficulties installing Bio::SCF ( https://metacpan.org/release/LDS/Bio-SCF-1.01 ) packages. My earlier attempts were successful (https://bioinformaticsonline.com/pages/view/36185/installing-bioscf-perl-module), but this time it got little messy. It return following errors, can you please enlightens me with your experience.


$/Bio-SCF-1.03$ make
cp SCF/Arrays.pm blib/lib/Bio/SCF/Arrays.pm
cp SCF.pm blib/lib/Bio/SCF.pm
Running Mkbootstrap for SCF ()
chmod 644 "SCF.bs"
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- SCF.bs bli
+b/arch/auto/Bio/SCF/SCF.bs 644
"/usr/bin/perl" "/usr/local/share/perl/5.26.1/ExtUtils/xsubpp"  -typem
+ap '/usr/share/perl/5.26/ExtUtils/typemap'  SCF.xs > SCF.xsc
Please specify prototyping behavior for SCF.xs (see perlxs manual)
mv SCF.xsc SCF.c
x86_64-linux-gnu-gcc -c   -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv 
+-fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -
+D_FILE_OFFSET_BITS=64 -O2 -g   -DVERSION=\"1.03\" -DXS_VERSION=\"1.03
+\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.26/CORE"  -DLITTLE_ENDIA
+N SCF.c
In file included from /usr/lib/x86_64-linux-gnu/perl/5.26/CORE/perl.h:
+5644:0,
                 from SCF.xs:5:
SCF.xs: In function ‘XS_Bio__SCF_get_scf_pointer’:
SCF.xs:57:20: warning: cast from pointer to integer of different size 
+[-Wpointer-to-int-cast]
  ret_val = newSViv((int)scf_data);
                    ^
/usr/lib/x86_64-linux-gnu/perl/5.26/CORE/embed.h:413:40: note: in defi
+nition of macro ‘newSViv’
 #define newSViv(a)  Perl_newSViv(aTHX_ a)
                                        ^
SCF.xs: In function ‘XS_Bio__SCF_get_scf_fpointer’:
SCF.xs:80:20: warning: cast from pointer to integer of different size 
+[-Wpointer-to-int-cast]
  ret_val = newSViv((int)scf_data);
                    ^
/usr/lib/x86_64-linux-gnu/perl/5.26/CORE/embed.h:413:40: note: in defi
+nition of macro ‘newSViv’
 #define newSViv(a)  Perl_newSViv(aTHX_ a)
                                        ^
SCF.xs: In function ‘XS_Bio__SCF_scf_free’:
SCF.xs:89:17: warning: cast to pointer from integer of different size 
+[-Wint-to-pointer-cast]
  scf_deallocate((Scf *)scf_pointer);
                 ^
SCF.xs: In function ‘XS_Bio__SCF_get_comments’:
SCF.xs:95:18: warning: cast to pointer from integer of different size 
+[-Wint-to-pointer-cast]
  Scf *scf_data = (Scf *)scf_pointer;
                  ^
SCF.xs: In function ‘XS_Bio__SCF_set_comments’:
SCF.xs:108:18: warning: cast to pointer from integer of different size
+ [-Wint-to-pointer-cast]
  Scf *scf_data = (Scf *)scf_pointer;
                  ^
SCF.xs: In function ‘XS_Bio__SCF_scf_write’:
SCF.xs:121:18: warning: cast to pointer from integer of different size
+ [-Wint-to-pointer-cast]
  Scf *scf_data = (Scf *)scf_pointer;
                  ^
SCF.xs: In function ‘XS_Bio__SCF_scf_fwrite’:
SCF.xs:137:18: warning: cast to pointer from integer of different size
+ [-Wint-to-pointer-cast]
  Scf *scf_data = (Scf *)scf_pointer;
                  ^
SCF.xs: In function ‘XS_Bio__SCF_get_from_header’:
SCF.xs:159:18: warning: cast to pointer from integer of different size
+ [-Wint-to-pointer-cast]
  Scf *scf_data = (Scf *)scf_pointer;
                  ^
SCF.xs: In function ‘XS_Bio__SCF_get_at’:
SCF.xs:186:18: warning: cast to pointer from integer of different size
+ [-Wint-to-pointer-cast]
  Scf *scf_data = (Scf *)scf_pointer;
                  ^
SCF.xs: In function ‘XS_Bio__SCF_set_base_at’:
SCF.xs:242:18: warning: cast to pointer from integer of different size
+ [-Wint-to-pointer-cast]
  Scf *scf_data = (Scf *)scf_pointer;
                  ^
SCF.xs: In function ‘XS_Bio__SCF_set_at’:
SCF.xs:255:18: warning: cast to pointer from integer of different size
+ [-Wint-to-pointer-cast]
  Scf *scf_data = (Scf *)scf_pointer;
                  ^
rm -f blib/arch/auto/Bio/SCF/SCF.so
LD_RUN_PATH="/usr/local/lib" x86_64-linux-gnu-gcc  -shared -L/usr/loca
+l/lib -fstack-protector-strong  SCF.o  -o blib/arch/auto/Bio/SCF/SCF.
+so  \
   -lstaden-read -lz   \
  
chmod 755 blib/arch/auto/Bio/SCF/SCF.so
Manifying 1 pod document

$/Bio-SCF-1.03$ make test
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- SCF.bs bli
+b/arch/auto/Bio/SCF/SCF.bs 644
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::H
+arness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/l
+ib', 'blib/arch')" t/*.t
t/scf.t .. Failed 17/18 subtests 

Test Summary Report
-------------------
t/scf.t (Wstat: 139 Tests: 1 Failed: 0)
  Non-zero wait status: 139
  Parse errors: Bad plan.  You planned 18 tests but ran 1.
Files=1, Tests=1,  1 wallclock secs ( 0.02 usr  0.01 sys +  0.12 cusr 
+ 0.02 csys =  0.17 CPU)
Result: FAIL
Failed 1/1 test programs. 0/1 subtests failed.
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In reply to Bio::SCF installation error ! by jnarayan81

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