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Uhm... let me think... file is huge, so it is not advisable to keep all the non-repeated sequences inside a hash, or your memory will blow.

I think it would be a good idea to use a message digest on the values to keep memory occupation low (at the expense of some CPU, of course); this also exposes you to the risk of two different sequences having the same digest -the probability should be low, but not null...

I have no data to test and I never used Digest::MD5 directly, so take the subsequent code as a suggestion -it may suit your needs or be completely wrong. I'm looking at the documentation on http://search.cpan.org/doc/GAAS/Digest-MD5-2.20/MD5.pm

use strict ; use warnings ; # ...if you have Perl 5.6 # read from stdin, spit data to stdout # (just to keep it simple) use Digest::MD5 qw(md5_hex) ; # or one of md5*'s my %digests ; while (my $line = <STDIN>) { my $dig = md5_hex($line) ; if (exists $digests{$dig}) { print STDERR "WARNING: duplicated checksum $dig for line $line +\nWARNING: skipping $line\n" ; $digest{$dig}++ ; # you can use this to count repetitions } else { $digest{$dig} = 0 ; print $line ; } }

If this not what you need, I hope that at least this can help you to reach the better solution.

--bronto

In reply to Re: finding and deleting repeated lines in a file by bronto
in thread finding and deleting repeated lines in a file by Becky

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