I recently had issues with Devel::Cover, (Devel::Cover Looks the Other Way), and while my project and test suite is still under development, I got the coverage from 41.3% to 52% just by upgrading Devel::Cover from version 0.40 to 0.47, on Perl 5.8.0.
It is always worth checking version number on modules, especially those labelled as "alpha".
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