#!/usr/bin/perl use strict; use warnings; use 5.014; use Bio::SeqIO; use Bio::Tools::SeqStats; my $in = Bio::SeqIO->new (-fh => \*DATA, -format=>'fasta'); while(my $seq = $in->next_seq() ) { my $seq_stats = Bio::Tools::SeqStats->new(-seq => $seq); my $count = $seq_stats->count_monomers(); print "Count: A $count->{A} T $count->{T} G $count->{G} C $count->{C}\n"; } __DATA__ >NR_037701 1 aggagctatgaatattaatgaaagtggtcctgatgcatgcatattaaaca tgcatcttacatatgacacatgttcaccttggggtggagacttaatattt aaatattgcaatcaggccctatacatcaaaaggtctattcaggacatgaa ggcactcaagtatgcaatctctgtaaacccgctagaaccagtcatggtcg gtgggctccttaccaggagaaaattaccgaaatcactcttgtccaatcaa agctgtagttatggctggtggagttcagttagtcagcatctggtggagct gcaagtgttttagtattgtttatttagaggccagtgcttatttagctgct agagaaaaggaaaacttgtggcagttagaacatagtttattcttttaagt gtagggctgcatgacttaacccttgtttggcatggccttaggtcctgttt gtaatttggtatcttgttgccacaaagagtgtgtttggtcagtcttatga cctctattttgacattaatgctggttggttgtgtctaaaccataaaaggg aggggagtataatgaggtgtgtctgacctcttgtcctgtcatggctggga actcagtttctaaggtttttctggggtcctctttgccaagagcgtttcta ttcagttggtggaggggacttaggattttatttttagtttgcagccaggg tcagtacatttcagtcacccccgcccagccctcctgatcctcctgtcatt cctcacatcctgtcattgtcagagattttacagatatagagctgaatcat ttcctgccatctcttttaacacacaggcctcccagatctttctaacccag gacctacttggaaaggcatgctgggtctcttccacagactttaagctctc cctacaccagaatttaggtgagtgctttgaggacatgaagctattcctcc caccaccagtagccttgggctggcccacgccaactgtggagctggagcgg