#!/usr/bin/env perl -l use strict; use warnings; use autodie; use Graph::Undirected; my $graph = Graph::Undirected::->new(); open my $input_fh, '<', './pm_graph_undirected.txt'; while (<$input_fh>) { my ($x, $y) = /^\w+[#]([^<]+)\s+<=>\s+(.*)$/; $graph = $graph->add_edge(split /,/) for glob join ',' => map { '{' . join(',' => split /[+ ]+/ => $_) . '}' } ($x, $y); } print $graph; #### $ cat pm_graph_undirected.txt R1#C01+ C02 <=> C03 + C04 R2#C01 + C04 + C05 <=> C07 + C08 + C09 #### $ pm_graph_undirected.pl C01=C03,C01=C04,C01=C07,C01=C08,C01=C09,C02=C03,C02=C04,C04=C07,C04=C08,C04=C09,C05=C07,C05=C08,C05=C09