$db_query = "SELECT ST.sno_name,HT.homolog_name FROM sno_Table ST,Homolog_Table HT,sno_Homologs SH,Organism O WHERE ST.sno_id=SH.sno_id AND SH.homolog_id=HT.homolog_id AND HT.org_id=O.org_id and (ST.family=$family) and O.organism='$TB'"; print "db_query: $db_query
"; # add this my $sth = $dbh->prepare($db_query); $sth->execute(); my $total = $sth->rows; print "total rows: $total
"; # add this