BB_B10

BB_B29

BB_B18

BB_B13

BB_B14

BB_B12

BB_B04

BB_B16

BB_B22

BB_B17

BB_B27

BB_B19

BB_B07

BB_B23

BB_B09

BB_B02

BB_B28

BB_B24

BB_B03

BB_B05

BB_B06


##</code><code>##

                     /locus_tag="BB_B01"
                     /db_xref="GeneID:1194411"
     CDS             46..324
                     /locus_tag="BB_B01"
                     /note="catalyzes the hydrolysis of acylphosphate"
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="NP_046987.2"
                     /db_xref="GI:364556794"
                     /db_xref="GeneID:1194411"
                     /translation="MYKQQYFISGKVQGVGFRFFTEQIANNMKLKGFVKNLNDGRVEI
                     VAFFNTKEQMKKFEKLLNGNKYSNIKNIEKIVLDENYPFQFNDFKIYY"
     misc_feature    46..321
                     /locus_tag="BB_B01"
                     /note="acylphosphatase; Provisional; Region: PRK14432"
                     /db_xref="CDD:184678"
     gene            complement  308..751  
                     /locus_tag="BB_B02"
                     /db_xref="GeneID:1194420"
     CDS             complement  308..751  
                     /locus_tag="BB_B02"
                     /note="hypothetical protein; identified by Glimmer;
                     putative"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_046988.1"
                     /db_xref="GI:11497029"
                     /db_xref="GeneID:1194420"
                     /translation="MKIGPHYFFKKILKSNDNRTIYISYLYDRLASVKPAGEWLRIYF
                     KDSKRGKKYFILFNRNSSNGSFISCSFLKTSCNCGLDIKFSDGNLNIFCRNRKSLEFL
                     KFKVEHFFRTSVSCYKNNNSYVHNIKPKNKVKVLVKREASPNNKF"
     gene            complement  837..2186  
                     /locus_tag="BB_B03"
                     /db_xref="GeneID:1194419"
     CDS             complement  837..2186  
                     /locus_tag="BB_B03"
                     /note="hypothetical protein; identified by Glimmer;
                     putative"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_046989.1"
                     /db_xref="GI:11497028"
                     /db_xref="GeneID:1194419"
                     /translation="MPPKVKIKNDFEIFRKELEILYKKYLNNELSYLKLKEKLKILAE
                     NHKAILFRKDKFTNRSIILNLSKTRKIIKEYINLSVIERIRRDNTFLFFWKSRRIKEL
                     KNIGIKDRKKIEELIFSNQMNDEKSYFQYFIDLFVTPKWLNDYAHKYKIEKINSYRKE
                     QIFVKINLNTYIEIIKLLLNQSRDIRLKFYGVLMAIGRRPVEVMKLSQFYIADKNHIR
                     MEFIAKKRENNIVNEVVFPVFADPELIINSIKEIRYMEQTENLTKEIISSNLAYSYNR
                     LFRQIFNNIFAPEESVYFCRAIYCKFSYLAFAPKNMEMNYWITKVLGHEPNDITTAFH
                     YNRYVLDNLDDKADNSLLTLLNQRIYTYVRRKATYSTLTMDRLESLIKEHHIFDDNYI
                     KTLIVIKNLMLKDNLETLAMVRGLNVKIRKAFKATYGYNYNYIKLTEYLSIIFNYKL"
     gene            complement  2476..3798  
                     /locus_tag="BB_B04"
                     /db_xref="GeneID:1194410"
     CDS             complement  2476..3798  
                     /locus_tag="BB_B04"

##</code><code>##

 
#!/usr/bin/perl -w
use Text::CSV;

my @arrayOfVals;
open(my $tmp, "<", "/Users/bioinformatics/Desktop/NC_001903.gbk.txt") || die "Could not open $!";

while (<$tmp>) {
	chomp;
	push(@arrayOfVals, $_);
}
close($tmp);

my @arrayFromCSV;
open(my $tmpFile, "<", "/Users/bioinformatics/Desktop/cp26_diffexpr.txt") || die "Could not open $!";

while (<$tmpFile>) {
	chomp;
	push(@arrayFromCSV, $_);
}
close($tmpFile);

foreach(@arrayFromCSV) {
	if ($_ eq "BB_B10") {
		print "MAtch!!\n";
	} else {print "$_\n";}
}

my @wkArray = @arrayOfVals;
my @secArrayFromCSV = @arrayFromCSV;


 while (my $matchCheck = shift @wkArray) {			
		$csvVal = shift(@secArrayFromCSV);
		if ( $csvVal =~ /$matchCheck/) {
			my $geneValue = shift(@wkArray);
	 		print "$geneValue\n";
		} else {
			print "no match";
			}
}