https://metacpan.org/pod/Bio::Graphics::DrawTransmembrane
####
use DrawTransmembrane;
$topology_final = 'IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII0IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIMMMMMMMMMOOOOOOOOOOOOOOOMMMMMMMIIIMMMMMMMMMOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMIIIMMMMMMMMMOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMIIIIIIIMMMMMMMMMMMOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMMIIIMMMMMMMMMMMOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMMIIIIIMMMMMMMMMOOOOOOOMMMMMMMMMMMIIIMMMMMMMMMMMOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMMIIIIMMMMMMMOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMIIIMMMMMMMMMMMOOOOOOOOOOOOOOMMMMMMMMMMMIIIIIMMMMMMMMMOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMMMMIIIMMMMMMMOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOMMMMMMMMM';
@total_top = ();
if($topology_final=~/M/)
{
while ($topology_final =~/(.)\1*/g)
{
if ($1 eq "M")
{
my $start_TM = $-[0] + 1;
my $end_TM = $+[0];
push @total_top, $start_TM;
push @total_top, $end_TM;
}
}
my $image = DrawTransmembrane->new
(
-title=>"topology prediction image",
-n_terminal=>'in',
-topology=>\@total_top,
-bold_helices=> 1,
-bold_labels=>1,
-text_offset=>-25,
-helix_label=>'b',
-outside_label=>'Extracellular',
-inside_label=>'Periplasm',
-membrane_label=>'Membrane',
-helix_width=>30,
-vertical_padding=>150,
-horizontal_padding=>120,
-n_terminal_offset=>50,
-n_terminal_height=>220,
-c_terminal_offset=>30,
-c_terminal_height=>220,
-helix_label=>'Sheet',
-colour_scheme=>'yellow'
);
open (OUTPUT, '>', 'test.png');
binmode OUTPUT;
print OUTPUT $image->png;
close (OUTPUT);
}
####
http://bioinformatics.biol.uoa.gr/TMRPres2D/screens/big4.png