BLAST RESULT FILE

BLASTN 2.2.31+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.

 

Database: Arabidopsis_thaliana.mRNA.EST.fasta
           1,529,700 sequences; 400,627,814 total letters

 

Query= Contig1

Length=941
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gi|61656031|gb|DN604734.1|DN604734 EST JCAt1g22640 Arabidopsis ...  219     4e-055
 

> gi|61656031|gb|DN604734.1|DN604734 EST JCAt1g22640 Arabidopsis 
Gateway cDNA Library Arabidopsis thaliana cDNA 3', mRNA sequence.
Length=740

 Score = 219 bits (118),  Expect = 4e-055
 Identities = 263/334 (79%), Gaps = 6/334 (2%)
 Strand=Plus/Minus

Query  60   AAAGGAGCTTGGACTAAAGAAGAAGATGAACGACTTATTTCTTATAT--TAAAACTCACG  117
            ||||||||||||||||||||||||||| | |  ||| ||  ||| ||    |||  ||||
Sbjct  734  AAAGGAGCTTGGACTAAAGAAGAAGATCAGCTTCTTGTTGATTACATCCGTAAA--CACG  677

Query  118  GCGAAGGTTGCTGGAGATCCCTTCCTAAAGCTGCCGGACTTCTCCGATGCGGTAAAAGTT  177
            | |||||||||||| |||| || |||   || || ||| | |   |||| ||||| ||||
Sbjct  676  GTGAAGGTTGCTGGCGATCTCTCCCTCGCGCCGCTGGATTACAAAGATGTGGTAAGAGTT  617

Query  178  GCCGTCTCCGATGGATTAATTACTTGAGACCGGACCTTAAACGCGGTAATTTTACTGAAG  237
            |  |  |  ||||||| |||||  | ||||| || || ||| | || |||||||||||||
Sbjct  616  GTAGATTGAGATGGATGAATTATCTAAGACCAGATCTCAAAAGAGGCAATTTTACTGAAG  557

Query  238  AAGAAGATGAACTCATTATCAAACTCCATAGCCTCCTTGGTAACAAATGGTCACTTATAG  297
            |||||||||||||||| ||||| ||||||||| | || ||||||||||||||  | ||||
Sbjct  556  AAGAAGATGAACTCATCATCAAGCTCCATAGCTTGCTCGGTAACAAATGGTCTTTAATAG  497

Query  298  CCGGAAGATTACCAGGAAGAACAGATAATGAGATAAAAAATTACTGGAATACGCACAT-A  356
            | || ||||||||||||||||||||||| ||||| || || || ||||| || || || |
Sbjct  496  CTGGGAGATTACCAGGAAGAACAGATAACGAGATCAAGAACTATTGGAACACTCATATCA  437

Query  357  AGAAGGAAGCTTTTGAGTCGGGGCATTGATCCAA  390
            || ||||||||| | || || || ||||||||||
Sbjct  436  AG-AGGAAGCTTCTCAGCCGTGGGATTGATCCAA  404

Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 326667943382


Query= Contig2

Length=1009


***** No hits found *****

 

Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 350998085934


Query= Contig3

Length=529


***** No hits found *****

 

Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 180381608828


Query= Contig4

Length=896
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gi|152034016|gb|AU239642.2|AU239642 EST AU239642 RAFL21 Arabido...  167     1e-039

> gi|152034016|gb|AU239642.2|AU239642 EST AU239642 RAFL21 Arabidopsis 
thaliana cDNA clone RAFL21-11-C04 5', mRNA sequence.
Length=632

 Score = 167 bits (90),  Expect = 1e-039
 Identities = 260/345 (75%), Gaps = 2/345 (1%)
 Strand=Plus/Plus

Query  232  ATTGCCAATACTAAGTCTTGGTTCCAATTCTATGGCGACGGCTTTTCTATTCGTGTTCCA  291
            ||||| || ||||||||||||||||| | || |||    || ||  ||||| | ||||| 
Sbjct  286  ATTGCGAACACTAAGTCTTGGTTCCAGTACTTTGGTAGTGGGTTCGCTATTAGGGTTCCT  345

Query  292  CCGGAATTTCAGGACCTCACTGAGCCGGAGGATTATAATGCTGGCCTATCACTATATGGA  351
            || || ||| | ||| ||| |||||| ||||||||   ||| ||  | || || ||||| 
Sbjct  346  CCTGACTTTGAAGACGTCAATGAGCCTGAGGATTACTCTGCGGGATTGTCTCTCTATGGT  405

Query  352  GATAAGGCTAAGCCCAAAAAATTT-GCAGCACGTTTTGCTTCTTCTGATGGATCCGAAGT  410
            || ||||| ||||| | ||| ||| || || || ||     || |||||||||| |||||
Sbjct  406  GACAAGGCAAAGCC-ACAAACTTTCGCCGCCCGGTTCCAAACTCCTGATGGATCAGAAGT  464

Query  411  TTTAAGTGTCATAATTCGTCCATCCAATCAGCTGAAGATCACTTTCTTAGAGGCTAAAGA  470
            ||| |||||  | |||||||| || ||||| || ||||||||||||||||||||||||||
Sbjct  465  TTTGAGTGTAGTCATTCGTCCTTCAAATCAACTTAAGATCACTTTCTTAGAGGCTAAAGA  524

Query  471  TATTACTGATTTAGGTTCACTTAAGGAGGCAGCAAAAATATTTGTTCCAGCTGGCTCAAC  530
            |||  ||||||| || ||| | ||||  || |||| | | |||||||||| ||   ||||
Sbjct  525  TATATCTGATTTGGGATCATTGAAGGCAGCTGCAAGACTTTTTGTTCCAGGTGCNGCAAC  584

Query  531  ACTATATTCTGTCCGCACAATAAAAATTAAAGAAGATGAGGGTTT  575
            | | || ||||  || ||||| ||  | || ||||| || |||||
Sbjct  585  AATTTACTCTGCTCGTACAATCAAGGTAAAGGAAGAAGAAGGTTT  629

Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 310567113752