tr1: 2048 tr2: 2048 s1: 2048 s2: 2048 m1: 2048 m2: 2048 m3: 2048 g: 2048 -------------------------------------------------------------------------------- >gi|5524211|gb|AAD44166.1| cytochrome b [Elephas maximus maximus] LCLYTHIGRNIYYGSYLYSETWNTGIMLLLITMATAFMGYVLPWGQMSFWGATVITNLFSAIPYIGTNLV EWIWGGFSVDKATLNRFFAFHFILPFTMVALAGVHLTFLHETGSNNPLGLTSDSDKIPFHPYYTIKDFLG LLILILLLLLLALLSPDMLGDPDNHMPADPLNTPLHIKPEWYFLFAYAILRSVPNKLGGVLALFLSIVIL GLMPFLHTSKHRSMMLRPLSQALFWTLTMDLLTLTWIGSQPVEYPYTIIGQMASILYFSIILAFLPIAGX IENY >SEQUENCE_1 -------------------------------------------------------------------------------- Benchmark: running grep, m1, m2, m3, s1, s2, tr1, tr2 for at least 10 CPU seconds... grep: 11 wallclock secs (10.25 usr + 0.00 sys = 10.25 CPU) @ 894.04/s (n=9163) m1: 11 wallclock secs (10.81 usr + 0.00 sys = 10.81 CPU) @ 728.89/s (n=7880) m2: 10 wallclock secs (10.58 usr + 0.00 sys = 10.58 CPU) @ 385.18/s (n=4074) m3: 11 wallclock secs (10.47 usr + 0.00 sys = 10.47 CPU) @ 599.25/s (n=6273) s1: 11 wallclock secs (10.44 usr + 0.00 sys = 10.44 CPU) @ 432.16/s (n=4510) s2: 11 wallclock secs (10.39 usr + 0.00 sys = 10.39 CPU) @ 926.56/s (n=9626) tr1: 10 wallclock secs (10.52 usr + 0.00 sys = 10.52 CPU) @ 2473.89/s (n=26013) tr2: 11 wallclock secs (10.64 usr + 0.00 sys = 10.64 CPU) @ 581.26/s (n=6184) Rate m2 s1 tr2 m3 m1 grep s2 tr1 m2 385/s -- -11% -34% -36% -47% -57% -58% -84% s1 432/s 12% -- -26% -28% -41% -52% -53% -83% tr2 581/s 51% 35% -- -3% -20% -35% -37% -77% m3 599/s 56% 39% 3% -- -18% -33% -35% -76% m1 729/s 89% 69% 25% 22% -- -18% -21% -71% grep 894/s 132% 107% 54% 49% 23% -- -4% -64% s2 927/s 141% 114% 59% 55% 27% 4% -- -63% tr1 2474/s 542% 472% 326% 313% 239% 177% 167% --