#! perl -sw use strict; use Inline::Files; my %reps = map{ split "\t", $_, 2 } ; chomp %reps; while( ) { my @items = split "\t", $_; $_ = $reps{ $_ } // $_ for @items; print join "\t", @items; } __REPLACEMENTS__ Aspergillus_clavatus_1 XP_001276684.1 pectate lyase, putative [Aspergillus clavatus NRRL 1] Aspergillus_fumigatus_2 XP_001276694.1 conserved hypothetical protein [Aspergillus fumigatus NRRL 1] Aspergillus_flavus_3 XP_001276726.1 tyrosinase central domain protein [Aspergillus flavus NRRL 1] Aspergillus_terreus_4 XP_001276738.1 endoglucanase, putative [Aspergillus terreus NRRL 1] __DATAFILE__ Aspergillus_clavatus_1 Aspergillus_flavus_198 Aspergillus_terreus_166 Aspergillus_fumigatus_2 Aspergillus_clavatus_1 Aspergillus_flavus_3 Aspergillus_terreus_4 Aspergillus_fumigatus_2 Aspergillus_clavatus_3 Aspergillus_flavus_198 Aspergillus_terreu_166 Aspergillus_fumigatus_16 #### C:\test>1157643 XP_001276684.1 pectate lyase, putative [Aspergillus clavatus NRRL 1] Aspergillus_flavus_198 Aspergillus_terreus_166 Aspergillus_fumigatus_2 XP_001276684.1 pectate lyase, putative [Aspergillus clavatus NRRL 1] Aspergillus_flavus_3 Aspergillus_terreus_4 Aspergillus_fumigatus_2 Aspergillus_clavatus_3 Aspergillus_flavus_198 Aspergillus_terreu_166 Aspergillus_fumigatus_16