cpan[7]> install GraphViz Running install for module 'GraphViz' Checksum for /home/uce/.cpan/sources/authors/id/R/RS/RSAVAGE/GraphViz-2.20.tgz ok Configuring R/RS/RSAVAGE/GraphViz-2.20.tgz with Build.PL Can't exec "dot": Ficheiro ou directoria inexistente at Build.PL line 14. Please install Graphviz from http://www.graphviz.org/. No 'Build' created RSAVAGE/GraphViz-2.20.tgz /usr/local/bin/perl Build.PL --installdirs site -- NOT OK Failed during this command: RSAVAGE/GraphViz-2.20.tgz : writemakefile NO -- No 'Build' created #### cpan[6]> install DB_File Running install for module 'DB_File' Checksum for /home/uce/.cpan/sources/authors/id/P/PM/PMQS/DB_File-1.838.tar.gz ok Configuring P/PM/PMQS/DB_File-1.838.tar.gz with Makefile.PL Parsing config.in... Looks Good. Checking if your kit is complete... Looks good 'EXPATINCPATH' is not a known MakeMaker parameter name. 'EXPATLIBPATH' is not a known MakeMaker parameter name. Warning (mostly harmless): No library found for -ldb Generating a Unix-style Makefile Writing Makefile for DB_File Writing MYMETA.yml and MYMETA.json PMQS/DB_File-1.838.tar.gz /usr/local/bin/perl Makefile.PL EXPATLIBPATH=/non-standard/lib EXPATINCPATH=/non-standard/include -- OK Running make for P/PM/PMQS/DB_File-1.838.tar.gz cp DB_File.pm blib/lib/DB_File.pm Running Mkbootstrap for DB_File () chmod 644 "DB_File.bs" "/usr/local/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- DB_File.bs blib/arch/auto/DB_File/DB_File.bs 644 cc -c -I/usr/local/BerkeleyDB/include -fwrapv -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -DVERSION=\"1.838\" -DXS_VERSION=\"1.838\" -fPIC "-I/usr/local/lib/perl5/5.24.0/x86_64-linux/CORE" -D_NOT_CORE -DmDB_Prefix_t=size_t -DmDB_Hash_t=u_int32_t version.c version.c:30:16: fatal error: db.h: Ficheiro ou directoria inexistente #include ^ compilation terminated. make: ** [version.o] Erro 1 PMQS/DB_File-1.838.tar.gz /usr/bin/make -- NOT OK Failed during this command: PMQS/DB_File-1.838.tar.gz : make NO #### cpan[5]> install Bio::SeqIO Running install for module 'Bio::SeqIO' Checksum for /home/uce/.cpan/sources/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.924.tar.gz ok Scanning cache /home/uce/.cpan/build for sizes ............................................................................DONE Configuring C/CJ/CJFIELDS/BioPerl-1.6.924.tar.gz with Build.PL Checking prerequisites... recommends: * DB_File is not installed * GraphViz is not installed * SOAP::Lite is not installed Checking optional features... Bio::DB::GFF Tests....disabled requires: ! DBI is not installed DB_File Tests.........disabled requires: ! DB_File is not installed EntrezGene............disabled requires: ! Bio::ASN1::EntrezGene is not installed MySQL Tests...........disabled requires: ! DBD::mysql is not installed ! DBI is not installed Pg Tests..............disabled requires: ! DBD::Pg is not installed ! DBI is not installed SQLite Tests..........disabled requires: ! DBD::SQLite is not installed ! DBI is not installed ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions of the modules indicated above before proceeding with this installation Install [a]ll BioPerl scripts, [n]one, or choose groups [i]nteractively? [a] ^CWarning: No success on command[/usr/local/bin/perl Build.PL --installdirs site] CJFIELDS/BioPerl-1.6.924.tar.gz /usr/local/bin/perl Build.PL --installdirs site -- NOT OK Failed during this command: CJFIELDS/BioPerl-1.6.924.tar.gz : writemakefile NO '/usr/local/bin/perl Build.PL --installdirs site' returned status 2 #### All tests successful. Files=334, Tests=21522, 120 wallclock secs ( 3.39 usr 0.47 sys + 107.39 cusr 4.43 csys = 115.68 CPU) Result: PASS