--Dummydata2.var--
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	IFS001_W1515808	Chr	Start	End	Ref	Alt	Func.refGene	Gene.refGene	GeneDetail.refGene	ExonicFunc.refGene	AAChange.refGene	Func.knownGene	Gene.knownGene	GeneDetail.knownGene	ExonicFunc.knownGene	AAChange.knownGene	avsnp144	1000g2015aug_all	1000g2015aug_afr	1000g2015aug_amr	1000g2015aug_sas	1000g2015aug_eur	1000g2015aug_eas	esp6500siv2_all	esp6500siv2_ea	esp6500siv2_aa	ExAC_ALL	ExAC_AFR	ExAC_AMR	ExAC_EAS	ExAC_FIN	ExAC_NFE	ExAC_OTH	ExAC_SAS	cosmic70	SIFT_score	SIFT_pred	Polyphen2_HDIV_score	Polyphen2_HDIV_pred	Polyphen2_HVAR_score	Polyphen2_HVAR_pred	LRT_score	LRT_pred	MutationTaster_score	MutationTaster_pred	MutationAssessor_score	MutationAssessor_pred	FATHMM_score	FATHMM_pred	PROVEAN_score	PROVEAN_pred	VEST3_score	CADD_raw	CADD_phred	DANN_score	fathmm-MKL_coding_score	fathmm-MKL_coding_pred	MetaSVM_score	MetaSVM_pred	MetaLR_score	MetaLR_pred	integrated_fitCons_score	integrated_confidence_value	GERP++_RS	phyloP7way_vertebrate	phyloP20way_mammalian	phastCons7way_vertebrate	phastCons20way_mammalian	SiPhy_29way_logOdds	Interpro_domain	dbscSNV_ADA_SCORE	dbscSNV_RF_SCORE	CLINSIG	CLNDBN	CLNACC	CLNDSDB	CLNDSDBID	HRC_AF	HRC_AC	HRC_AN	HRC_non1000G_AF	HRC_non1000G_AC	HRC_non1000G_AN	Kaviar_AF	Kaviar_AC	Kaviar_AN	nci60	KEY3	INFO_AC	INFO_AF	INFO_BaseQRankSum	INFO_ClippingRankSum	INFO_DP	INFO_DS	INFO_END	INFO_ExcessHet	INFO_FS	INFO_HaplotypeScore	INFO_InbreedingCoeff	INFO_MLEAC	INFO_MLEAF	INFO_MQ	INFO_MQRankSum	INFO_QD	INFO_RAW_MQ	INFO_ReadPosRankSum	INFO_SOR	seq	seq_flag	AAchange	Grantham	Mutability	FuentesFalsePositive	ACMG
chr1	14464	.	A	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;ClippingRankSum=0.00;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.51;MQRankSum=-6.740e-01;QD=9.94;ReadPosRankSum=0.674;SOR=2.303	GT:AD:DP:GQ:PL	0/1:2,2:4:64:68,0,64	chr1	14464	14464	A	T	ncRNA_exonic	WASH7P				intergenic	NONE,MIR6859-3	dist=NONE;dist=2905			rs546169444	0.0958466	0.0144	0.1138	0.1943	0.1859	0.005																																																													0.0346166	901	26028		chr1:14464:14464:A:T	1	0.5	1.38	0	4	no_DS	no_END	3.0103	0	no_HaplotypeScore	no_InbreedingCoeff	1	0.5	40.51	-6.74E-01	9.94	no_RAW_MQ	0.674	2.303	GTTCTTTATTGATTGGTGTGCCGTTTTCTCTGGAAGCCTCTTAAGAACAC[A]GTGGCGCAGGCTGGGTGGAGCCGTCCCCCCATGGAGCACAGGCAGACAGA	pass	XX	.	0	1	0
chr1	17407	.	G	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;ClippingRankSum=0.00;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.25;MQRankSum=1.74;QD=2.39;ReadPosRankSum=-1.500e-02;SOR=0.608	GT:AD:DP:GQ:PL	0/1:49,10:59:99:169,0,1261	chr1	17407	17407	G	A	ncRNA_exonic	MIR6859-1,MIR6859-2,MIR6859-3,MIR6859-4				ncRNA_exonic	MIR6859-3				rs372841554										0.0765	0.0303	0.054	0.0672	0.0273	0.0894	0.0714	0.1352																																																		0.0030013	464	154602		chr1:17407:17407:G:A	1	0.5	2.44	0	60	no_DS	no_END	3.0103	0	no_HaplotypeScore	no_InbreedingCoeff	1	0.5	49.25	1.74	2.39	no_RAW_MQ	-1.50E-02	0.608	TACTTCTTCTACCTACAGAGGCGACATGGGGGTCAGGCAAGCTGACACCC[G]CTGTCCTGAGCCCATGTTCCTCTCCCACATCATCAGGGGCACAGCGTGCA	pass	XX	.	0	0	0
chr1	17758	.	T	A	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.00;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.87;MQRankSum=-5.240e-01;QD=15.15;ReadPosRankSum=-5.240e-01;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,3:5:63:104,0,63	chr1	17758	17758	T	A	ncRNA_splicing	WASH7P	NR_024540:exon5:c.451-16A>T			upstream	MIR6859-3																																																																											chr1:17758:17758:T:A	1	0.5	0.674	0	5	no_DS	no_END	3.0103	0	no_HaplotypeScore	no_InbreedingCoeff	1	0.5	38.87	-5.24E-01	15.15	no_RAW_MQ	-5.24E-01	1.022	GTGCTCACGCACACAGGAAAGTCCTTCAGCTTCTCCTGAGAGGGCCAGGA[T]GGCCAAGGGATGGTGAATATTTGGTGCTGGGCCTAATCAGCTGCCATCCC	pass	XX	.	0	1	0
chr1	69511	.	A	G	2186.77	.	AC=2;AF=1.00;AN=2;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=43.68;QD=28.04;SOR=0.744	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2215,234,0	chr1	69511	69511	A	G	exonic	OR4F5		nonsynonymous SNV	OR4F5:NM_001005484:exon1:c.A421G:p.T141A	exonic	OR4F5		nonsynonymous SNV	OR4F5:uc001aal.1:exon1:c.A421G:p.T141A	rs2691305							0.7598	0.8874	0.5441	0.9394	0.5942	0.9507	0.9994	0.9907	0.9716	0.9597	0.9832		0.652	T	0	B	0	B	0	N	1	P	-1.295	N	1.26	T	1.54	N	0.012	-0.784	0.047	0.454	0.003	N	-0.997	T	0	T	0.487	0	1.15	-0.016	-0.132	0.055	0.765	4.198	GPCR, rhodopsin-like, 7TM														0.54161	83734	154602	0.51	chr1:69511:69511:A:G	2	1	no_BaseQRankSum	no_ClippingRankSum	78	no_DS	no_END	3.0103	0	no_HaplotypeScore	no_InbreedingCoeff	2	1	43.68	no_MQRankSum	28.04	no_RAW_MQ	no_ReadPosRankSum	0.744	ACTACACTACAATTATGTGTGGCAACGCATGTGTCGGCATTATGGCTGTC[A]CATGGGGAATTGGCTTTCTCCATTCGGTGAGCCAGTTGGCGTTTGCCGTG	pass	TA	.	0	1	0
chr1	138041	.	G	A	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;ClippingRankSum=0.00;DP=19;ExcessHet=3.0103;FS=8.903;MLEAC=1;MLEAF=0.500;MQ=30.73;MQRankSum=-1.007e+00;QD=6.30;ReadPosRankSum=1.18;SOR=0.493	GT:AD:DP:GQ:PL	0/1:12,7:19:99:148,0,289	chr1	138041	138041	G	A	ncRNA_exonic	LOC729737				intergenic	RP11-34P13.7,RP11-34P13.14	dist=4318;dist=1749			rs560358882	0.00239617		0.0029	0.0051	0.005																																																														0.0015368	40	26028		chr1:138041:138041:G:A	1	0.5	1.97	0	19	no_DS	no_END	3.0103	8.903	no_HaplotypeScore	no_InbreedingCoeff	1	0.5	30.73	-1.01E+00	6.3	no_RAW_MQ	1.18	0.493	GAAGGGAAAAACTGGGCCTGGAAAGGCCGTTGTCAGGAATGAGCCCCATG[G]GCCTGAAGAGGCCACTGGCAGGCGGGAGCTGGGCCTGCCGAAGCGGCCGA	pass	XX	.	0	0	0
chr1	138156	.	G	T	120.84	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=20.17;QD=20.14;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,6:6:18:149,18,0	chr1	138156	138156	G	T	ncRNA_exonic	LOC729737				intergenic	RP11-34P13.7,RP11-34P13.14	dist=4433;dist=1634			rs370691115																																																																			0.0967804	2519	26028		chr1:138156:138156:G:T	2	1	no_BaseQRankSum	no_ClippingRankSum	6	no_DS	no_END	3.0103	0	no_HaplotypeScore	no_InbreedingCoeff	2	1	20.17	no_MQRankSum	20.14	no_RAW_MQ	no_ReadPosRankSum	0.693	GGACTCGGGAGGCCGCAGTGAAGCAACAGCTAGCTGGGCGTGGAGAGTCC[G]CTGTGAGGCAGAGGCTGGGCCTGTGCAGGCCTTCGGGAGGCAGGAGGCTG	pass	XX	.	0	0	0
chr1	139213	.	A	G	1774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.140e+00;ClippingRankSum=0.00;DP=97;ExcessHet=3.0103;FS=3.809;MLEAC=1;MLEAF=0.500;MQ=39.41;MQRankSum=-1.653e+00;QD=18.30;ReadPosRankSum=-7.760e-01;SOR=1.060	GT:AD:DP:GQ:PGT:PID:PL	0/1:51,46:97:99:0|1:139213_A_G:1803,0,3192	chr1	139213	139213	A	G	ncRNA_exonic	LOC729737				downstream	RP11-34P13.14				rs370723703										0.2506	0.3787	0.2879	0.3404	0.25	0.2597	0.3083	0.2352																																																		0.0259699	4015	154602		chr1:139213:139213:A:G	1	0.5	-4.14E+00	0	97	no_DS	no_END	3.0103	3.809	no_HaplotypeScore	no_InbreedingCoeff	1	0.5	39.41	-1.65E+00	18.3	no_RAW_MQ	-7.76E-01	1.06	GGAAGGTTGCCATGAGACAAAAGTTGGGCCTGGAAAGGCCCTTGTGAAGC[A]TGAGCTTGGCCTAAAGAGGCCACTGGGTGGCAGGAGCTGGGTGTGTAGAA	pass	XX	.	0	0	0
chr1	139233	.	C	A	1883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.990e-01;ClippingRankSum=0.00;DP=110;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=39.80;MQRankSum=0.636;QD=17.13;ReadPosRankSum=-1.834e+00;SOR=0.595	GT:AD:DP:GQ:PGT:PID:PL	0/1:56,54:110:99:0|1:139213_A_G:1912,0,3261	chr1	139233	139233	C	A	ncRNA_exonic	LOC729737				downstream	RP11-34P13.14				rs373847457										0.2478	0.3763	0.2985	0.3548	.	0.2577	0.3103	0.2308																																																		0.0254654	3937	154602		chr1:139233:139233:C:A	1	0.5	-9.99E-01	0	110	no_DS	no_END	3.0103	2.463	no_HaplotypeScore	no_InbreedingCoeff	1	0.5	39.8	0.636	17.13	no_RAW_MQ	-1.83E+00	0.595	AAGTTGGGCCTGGAAAGGCCCTTGTGAAGCATGAGCTTGGCCTAAAGAGG[C]CACTGGGTGGCAGGAGCTGGGTGTGTAGAAGCTGCTGAAAGGTTGGGAGC	pass	XX	.	0	0	0