--Dummydata3.var--
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	IFS002_W1600378	Chr	Start	End	Ref	Alt	Func.refGene	Gene.refGene	GeneDetail.refGene	ExonicFunc.refGene	AAChange.refGene	Func.knownGene	Gene.knownGene	GeneDetail.knownGene	ExonicFunc.knownGene	AAChange.knownGene	avsnp144	1000g2015aug_all	1000g2015aug_afr	1000g2015aug_amr	1000g2015aug_sas	1000g2015aug_eur	1000g2015aug_eas	esp6500siv2_all	esp6500siv2_ea	esp6500siv2_aa	ExAC_ALL	ExAC_AFR	ExAC_AMR	ExAC_EAS	ExAC_FIN	ExAC_NFE	ExAC_OTH	ExAC_SAS	cosmic70	SIFT_score	SIFT_pred	Polyphen2_HDIV_score	Polyphen2_HDIV_pred	Polyphen2_HVAR_score	Polyphen2_HVAR_pred	LRT_score	LRT_pred	MutationTaster_score	MutationTaster_pred	MutationAssessor_score	MutationAssessor_pred	FATHMM_score	FATHMM_pred	PROVEAN_score	PROVEAN_pred	VEST3_score	CADD_raw	CADD_phred	DANN_score	fathmm-MKL_coding_score	fathmm-MKL_coding_pred	MetaSVM_score	MetaSVM_pred	MetaLR_score	MetaLR_pred	integrated_fitCons_score	integrated_confidence_value	GERP++_RS	phyloP7way_vertebrate	phyloP20way_mammalian	phastCons7way_vertebrate	phastCons20way_mammalian	SiPhy_29way_logOdds	Interpro_domain	dbscSNV_ADA_SCORE	dbscSNV_RF_SCORE	CLINSIG	CLNDBN	CLNACC	CLNDSDB	CLNDSDBID	HRC_AF	HRC_AC	HRC_AN	HRC_non1000G_AF	HRC_non1000G_AC	HRC_non1000G_AN	Kaviar_AF	Kaviar_AC	Kaviar_AN	nci60	KEY3	INFO_AC	INFO_AF	INFO_BaseQRankSum	INFO_ClippingRankSum	INFO_DP	INFO_DS	INFO_END	INFO_ExcessHet	INFO_FS	INFO_HaplotypeScore	INFO_InbreedingCoeff	INFO_MLEAC	INFO_MLEAF	INFO_MQ	INFO_MQRankSum	INFO_QD	INFO_RAW_MQ	INFO_ReadPosRankSum	INFO_SOR	seq	seq_flag	AAchange	Grantham	Mutability	FuentesFalsePositive	ACMG
chr1	14590	.	G	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.43;ClippingRankSum=0.00;DP=11;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=28.67;MQRankSum=-1.513e+00;QD=10.80;ReadPosRankSum=0.357;SOR=1.981	GT:AD:DP:GQ:PGT:PID:PL	0/1:7,4:11:99:0|1:14590_G_A:147,0,307	chr1	14590	14590	G	A	ncRNA_exonic	WASH7P				intergenic	NONE,MIR6859-3	dist=NONE;dist=2779																																																																										chr1:14590:14590:G:A	1	0.5	2.43	0	11	no_DS	no_END	3.0103	3.09	no_HaplotypeScore	no_InbreedingCoeff	1	0.5	28.67	-1.51E+00	10.8	no_RAW_MQ	0.357	1.981	CAAGCCAGCCTTCCGCTCCTTGAAGCTGGTCTCCACACAGTGCTGGTTCC[G]TCACCCCCTCCCAAGGAAGTAGGTCTGAGCAGCTTGTCCTGGCTGTGTCC	pass	XX	.	0	1	0
chr1	14599	.	T	A	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.00;DP=12;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=30.13;MQRankSum=-1.712e+00;QD=9.65;ReadPosRankSum=1.16;SOR=1.721	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,4:12:99:0|1:14590_G_A:144,0,349	chr1	14599	14599	T	A	ncRNA_exonic	WASH7P				intergenic	NONE,MIR6859-3	dist=NONE;dist=2770			rs531646671	0.147564	0.121	0.1758	0.2096	0.161	0.0893																																																													0.0283925	739	26028		chr1:14599:14599:T:A	1	0.5	0.253	0	12	no_DS	no_END	3.0103	2.881	no_HaplotypeScore	no_InbreedingCoeff	1	0.5	30.13	-1.71E+00	9.65	no_RAW_MQ	1.16	1.721	CTTCCGCTCCTTGAAGCTGGTCTCCACACAGTGCTGGTTCCGTCACCCCC[T]CCCAAGGAAGTAGGTCTGAGCAGCTTGTCCTGGCTGTGTCCATGTCAGAG	homopolymer	XX	.	0	1	0
chr1	14604	.	A	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;ClippingRankSum=0.00;DP=12;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=30.13;MQRankSum=-1.712e+00;QD=12.65;ReadPosRankSum=1.34;SOR=1.721	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,4:12:99:0|1:14590_G_A:180,0,346	chr1	14604	14604	A	G	ncRNA_exonic	WASH7P				intergenic	NONE,MIR6859-3	dist=NONE;dist=2765			rs541940975	0.147564	0.121	0.1758	0.2096	0.161	0.0893																																																													0.0285846	744	26028		chr1:14604:14604:A:G	1	0.5	1.02	0	12	no_DS	no_END	3.0103	2.881	no_HaplotypeScore	no_InbreedingCoeff	1	0.5	30.13	-1.71E+00	12.65	no_RAW_MQ	1.34	1.721	GCTCCTTGAAGCTGGTCTCCACACAGTGCTGGTTCCGTCACCCCCTCCCA[A]GGAAGTAGGTCTGAGCAGCTTGTCCTGGCTGTGTCCATGTCAGAGCAACG	pass	XX	.	0	1	0
chr1	14610	.	T	C	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.16;ClippingRankSum=0.00;DP=13;ExcessHet=3.0103;FS=3.123;MLEAC=1;MLEAF=0.500;MQ=31.00;MQRankSum=-1.442e+00;QD=11.67;ReadPosRankSum=0.860;SOR=2.030	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,5:13:99:0|1:14590_G_A:180,0,346	chr1	14610	14610	T	C	ncRNA_exonic	WASH7P				intergenic	NONE,MIR6859-3	dist=NONE;dist=2759																																																																						0.0001921	5	26028		chr1:14610:14610:T:C	1	0.5	3.16	0	13	no_DS	no_END	3.0103	3.123	no_HaplotypeScore	no_InbreedingCoeff	1	0.5	31	-1.44E+00	11.67	no_RAW_MQ	0.86	2.03	TGAAGCTGGTCTCCACACAGTGCTGGTTCCGTCACCCCCTCCCAAGGAAG[T]AGGTCTGAGCAGCTTGTCCTGGCTGTGTCCATGTCAGAGCAACGGCCCAA	pass	XX	.	0	1	0
chr1	14653	.	C	T	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;ClippingRankSum=0.00;DP=25;ExcessHet=3.0103;FS=7.952;MLEAC=1;MLEAF=0.500;MQ=30.99;MQRankSum=-1.236e+00;QD=10.19;ReadPosRankSum=0.792;SOR=2.642	GT:AD:DP:GQ:PL	0/1:12,13:25:99:283,0,238	chr1	14653	14653	C	T	ncRNA_exonic	WASH7P				intergenic	NONE,MIR6859-3	dist=NONE;dist=2716			rs62635297																																																																			0.0011526	30	26028		chr1:14653:14653:C:T	1	0.5	1.91	0	25	no_DS	no_END	3.0103	7.952	no_HaplotypeScore	no_InbreedingCoeff	1	0.5	30.99	-1.24E+00	10.19	no_RAW_MQ	0.792	2.642	AAGGAAGTAGGTCTGAGCAGCTTGTCCTGGCTGTGTCCATGTCAGAGCAA[C]GGCCCAAGTCTGGGTCTGGGGGGGAAGGTGTCATGGAGCCCCCTACGATT	pass	XX	.	0	1	0
chr1	16949	.	A	C	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.580e-01;ClippingRankSum=0.00;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=21.07;MQRankSum=-1.095e+00;QD=5.93;ReadPosRankSum=-3.240e-01;SOR=0.515	GT:AD:DP:GQ:PL	0/1:19,12:31:99:212,0,396	chr1	16949	16949	A	C	ncRNA_exonic	WASH7P				downstream	MIR6859-3				rs199745162	0.0139776	0.0227	0.0144	0.0143	0.0159																																																														0.0159444	415	26028		chr1:16949:16949:A:C	1	0.5	-7.58E-01	0	31	no_DS	no_END	3.0103	0	no_HaplotypeScore	no_InbreedingCoeff	1	0.5	21.07	-1.10E+00	5.93	no_RAW_MQ	-3.24E-01	0.515	CTGGAATGGTGCCAGGGGCAGAGGGGGCAATGCCGGGGCCCAGGTCGGCA[A]TGTACATGAGGTCGTTGGCAATGCCGGGCAGGTCAGGCAGGTAGGATGGA	pass	XX	.	0	1	0
chr1	17020	.	G	A	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024e+00;ClippingRankSum=0.00;DP=26;ExcessHet=3.0103;FS=14.474;MLEAC=1;MLEAF=0.500;MQ=21.00;MQRankSum=0.00;QD=3.84;ReadPosRankSum=-2.034e+00;SOR=2.800	GT:AD:DP:GQ:PL	0/1:18,8:26:99:128,0,424	chr1	17020	17020	G	A	ncRNA_exonic	WASH7P				downstream	MIR6859-3				rs199740902																																																																			0.0141002	367	26028		chr1:17020:17020:G:A	1	0.5	-1.02E+00	0	26	no_DS	no_END	3.0103	14.474	no_HaplotypeScore	no_InbreedingCoeff	1	0.5	21	0	3.84	no_RAW_MQ	-2.03E+00	2.8	ATGCCGGGCAGGTCAGGCAGGTAGGATGGAACATCAATCTCAGGCACCTG[G]CCCAGGTCTGGCACATAGAAGTAGTTCTCTGGGACCTGCAAGATTAGGCA	pass	XX	.	0	1	0
chr1	17365	.	C	G	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.00;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.91;MQRankSum=-1.245e+00;QD=3.60;ReadPosRankSum=-1.701e+00;SOR=0.485	GT:AD:DP:GQ:PGT:PID:PL	0/1:36,7:43:99:0|1:17365_C_G:183,0,2051	chr1	17365	17365	C	G	ncRNA_exonic	WASH7P				downstream	MIR6859-3				rs369606208										0.2553	0.1603	0.221	0.3841	0.2245	0.2715	0.2581	0.2883																																																		7.76E-05	12	154602		chr1:17365:17365:C:G	1	0.5	0.621	0	43	no_DS	no_END	3.0103	0	no_HaplotypeScore	no_InbreedingCoeff	1	0.5	43.91	-1.25E+00	3.6	no_RAW_MQ	-1.70E+00	0.485	TGGGTCTTTGTTACAGCACCAGCCAGGGGGTCCAGGAAGACATACTTCTT[C]TACCTACAGAGGCGACATGGGGGTCAGGCAAGCTGACACCCGCTGTCCTG	pass	XX	.	0	1	0