open IN2, $first_tmp; while() { if($_=~/^(chr.*?)REC:(.*)/) { $respective_chrom=$1; $all_entries=$2; @split_entries=(); @split_entries = split(/\#/, $all_entries); @split_sep_entries=(); %collapsed_loci_HoA=(); print ">".$respective_chrom."\n"; foreach $sep_entry(@split_entries) { @split_sep_entries = split(/\t/, $sep_entry); $locus_to_use = $split_sep_entries[1]; $rest_entry=$split_sep_entries[0]."\t".$split_sep_entries[2]."\t". $split_sep_entries[3]."\t".$split_sep_entries[4]."\t". $split_sep_entries[5]."\t".$split_sep_entries[6]."\t". $split_sep_entries[7]; push @{ $collapsed_loci_HoA{$locus_to_use} }, $rest_entry; } @array_of_loci = keys %collapsed_loci_HoA; for $b(sort { $b <=> $a } @array_of_loci) { $count_arr++; } print "//\n"; } } close IN2;