chrM	2928	A	G	17	0	0%	A	46	105	69.54%	R	Somatic	1	1.23052720566294E-008	17	29	50	55	4	13	0	0 
 chr1	108310	T	C	9	0	0%	T	3	5	62.5%	Y	Somatic	1	0.0090497738	2	1	2	3	7	2	0	0 
 chr1	726958	T	A	11	0	0%	T	9	4	30.77%	W	Somatic	1	0.0672877847	6	3	1	3	5	6	0	0 
 chr1	1412720	C	A	33	0	0%	C	22	6	21.43%	M	Somatic	1	0.0067850063	10	12	3	3	14	19	0	0 
chr1	1822396	C	G	6	0	0%	C	4	4	50%	S	Somatic	1	0.0699300699	3	1	2	2	4	2	0	0 
 chr1	1822457	C	T	10	0	0%	C	4	4	50%	Y	Somatic	1	0.022875817	3	1	2	2	6	4	0	0 

##</code><code>##

 while (my $line = <FILE>) {
	next if ($. == 1);
	chomp $line;
	my @sepline = split ("\t", $line);
	my $chromosome = $sepline[0];
	my $chrpos = $sepline[1];
	my $nmreads = $sepline[8];
	my $mutants = $sepline[9];
	my $totalreads = $nmreads + $mutants;
	next if ($chromosome = /^chrM/);
	print ("$nmreads $mutants $totalreads\n");
	

}