Lens culinaris cultivar Northfield chloroplast, complete genome
NCBI Reference Sequence: NC_027152.1
FASTA Graphics
 LOCUS       NC_027152             122967 bp    DNA     circular PLN 03-JUN-2015
DEFINITION  Lens culinaris cultivar Northfield chloroplast, complete genome.
ACCESSION   NC_027152
VERSION     NC_027152.1
DBLINK      BioProject: PRJNA285561
KEYWORDS    RefSeq.
SOURCE      chloroplast Lens culinaris (lentil)
  ORGANISM  Lens culinaris
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae;
            Fabeae; Lens.
REFERENCE   1  (bases 1 to 122967)
  AUTHORS   Sveinsson,S. and Cronk,Q.
  TITLE     Delimitation of conserved gene clusters in the scrambled plastomes
            of the IRLC legumes (Fabaceae: Trifolieae, Fabeae)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 122967)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUN-2015) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 122967)
  AUTHORS   Sveinsson,S. and Cronk,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAY-2014) Botany, University of British Columbia,
            3529-6270 University Blvd, Vancouver, British Columbia V6T1Z4,
            Canada
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to KJ850239.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..122967
                     /organism="Lens culinaris"
                     /organelle="plastid:chloroplast"
                     /mol_type="genomic DNA"
                     /cultivar="Northfield"
                     /db_xref="taxon:3864"
     gene            complement(313..1374)
                     /gene="psbA"
                     /locus_tag="ABY07_gp001"
                     /db_xref="GeneID:24418176"
     CDS             complement(313..1374)
                     /gene="psbA"
                     /locus_tag="ABY07_gp001"
                     /codon_start=1
                     /transl_table=11
                     /product="photosystem II protein D1"
                     /protein_id="YP_009141518.1"
                     /db_xref="GeneID:24418176"
                     /translation="MTAILERRDSENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTA
                     TSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASV
                     DEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLI
                     YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
                     VTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLA
                     AWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHER
                     NAHNFPLDLAAVEAPSING"
     gene            complement(1691..4236)
                     /gene="trnK-UUU"
                     /locus_tag="ABY07_gt001"
                     /db_xref="GeneID:24418184"
     tRNA            complement(join(1691..1719,4200..4236))
                     /gene="trnK-UUU"
                     /locus_tag="ABY07_gt001"
                     /product="tRNA-Lys"
                     /note="anticodon:UUU"
                     /db_xref="GeneID:24418184"
     gene            complement(1967..3490)
                     /gene="matK"
                     /locus_tag="ABY07_gp074"
                     /db_xref="GeneID:24418113"
     CDS             complement(1967..3490)
                     /gene="matK"
                     /locus_tag="ABY07_gp074"
                     /codon_start=1
                     /transl_table=11
                     /product="maturase K"
                     /protein_id="YP_009141519.1"
                     /db_xref="GeneID:24418113"
                     /translation="MKESQVYLERARSRQQHFLYSLIFREYIYGLAYSHNLNRSLFVE
                     NVGYDNKYSLLIVKRLITRMYQQNHLIISANDSNKNSFWGYNNNYYSQIISEGFSIVV
                     EIPFFLQLSSSLEEAEIIKYYKNFRSIHSIFPFLEDKFTYLNYVSDIRIPYPIHLEIL
                     VQILRYWVKDAPFFHLLRLFLCNWNSFITTKNKKSISTFSKINPRFFLFLYNFYVCEY
                     ESIFVFLRNQSSHLPLKSFRVFFERIFFYAKREHLVKLFAKDFLYTLTLTFFKDPNIH
                     YVRYQGKCILASKNAPFLMDKWKHYFIHLWQCFFDVWSQPRTININPLSEHSFKLLGY
                     FSNVRLNRSVVRSQMLQNTFLIEIVIKKIDIIVPILPLIRSLAKAKFCNVLGQPISKP
                     VWADSSDFDIIDRFLRISRNLSHYYKGSSKKKSLYRIKYILRLSCIKTLACKHKSTVR
                     AFLKRSGSEEFLQEFFTEEEEILSLIFPRDSSTLERLSRNRIWYLDILFSNDLVHDE"
     gene            complement(4722..6149)
                     /gene="rbcL"
                     /locus_tag="ABY07_gp073"
                     /db_xref="GeneID:24418112"
     CDS             complement(4722..6149)
                     /gene="rbcL"
                     /locus_tag="ABY07_gp073"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose 1,5-bisphosphate carboxylase/oxygenase
                     large subunit"
                     /protein_id="YP_009141520.1"
                     /db_xref="GeneID:24418112"
                     /translation="MSPQTETKAKVGFQAGVKDYKLTYYTPEYQTKDTDILAAFRVTP
                     QPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYEIEPVPGEDNQFIAYVA
                     YPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPNAYVKTFQGPPHGIQVERD
                     KLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRF
                     LFCAEAIYKSQAETGEIKGHYLNATAGTCEEMLKRAIFARELGVPIVMHDYLTGGFTA
                     NTTLSHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGK
                     LEGEREITLGFVDLLRDDYIEKDRSRGIYFTQDWVSLPGVIPVASGGIHVWHMPALTE
                     IFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNAIIREAGK
                     WSPELAAACEVWKEIKFEFPAMDTL"
     gene            6916..8385
                     /gene="atpB"
                     /locus_tag="ABY07_gp072"
                     /db_xref="GeneID:24418114"
     CDS             6916..8385
                     /gene="atpB"
                     /locus_tag="ABY07_gp072" 

     ..................................... (Many lines omitted here) 

122821 aaaagcttcg ggtaaatcac gaaagctacc gtaacagctg caacaggagt ctattataaa
   122881 ttattttctc ttttttgttt taatagattc atgggcgaac gacgggaatt gaacccgcgc
   122941 atggtggatt cacaatccac tgccttg
// 


##</code><code>##

 #!/usr/bin/perl 
use warnings;
use strict; 

use Bio::DB::GenBank;
use Bio::SeqIO;  
use Text::Wrap; 

 my $acc="NC_027152.1"; 

 my $gb= new Bio::DB::GenBank;
 my $seq1 = $gb->get_Seq_by_acc($acc);
 my $sequence = $seq1->seq; 

print "\n Complete sequence:
$sequence\n"; 

# code for intergenic sequence needed

# code for intron sequence needed

exit; 
#################