gunzip -k hs_ref_GRCh38.p12_chr20.fa.gz #### { "counts" => { AAA => 2104860, AAC => 887983, AAG => 1197774, AAN => 4, AAT => 1303394, ACA => 1224148, ACC => 766646, ACG => 188734, ACN => 3, ACT => 979085, AGA => 1372793, AGC => 973647, AGG => 1231994, AGN => 6, AGT => 974059, ANA => 1, ANN => 21, ATA => 1032519, ATC => 796743, ATG => 1102255, ATN => 6, ... "cum-twisted-dist" => { AA => [ "A", 0.383118721008224, "T", 0.620357607323606, "N", 0.6203583353886, "C", 0.781985669860749, "G", 1, ], AC => [ "A", 0.387558348339906, "C", 0.630274145385194, "G", 0.690026264667816, "T", 0.99999905021693, "N", 1, ], AG => [ "A", 0.301547128291516, "C", 0.515418015467988, "T", 0.729379402389764, "N", 0.72938072034722, "G", 1, ], AN => ["N", 0.954545454545455, "A", 1], ... NN => [ "A", 0.000263451851539613, "T", 0.000442599110586549, "C", 0.000547979851202394, "N", 0.999915695407507, "G", 1, ], ... "dist" => { AAA => 0.0335770294488858, AAC => 0.0141652325290566, AAG => 0.0191070631163639, AAN => 6.3808575295052e-08, AAT => 0.0207919285470298, ... NAA => 6.3808575295052e-08, NAC => 3.1904287647526e-08, NAG => 2.71186445003971e-07, NAT => 6.3808575295052e-08, NCA => 3.1904287647526e-08, NCC => 3.1904287647526e-08, NCT => 7.97607191188151e-08, NGA => 6.3808575295052e-08, NGC => 1.5952143823763e-08, NGG => 3.1904287647526e-08, NGT => 7.97607191188151e-08, NNA => 3.98803595594075e-07, NNC => 1.5952143823763e-07, NNG => 1.27617150590104e-07, NNN => 0.00151280560738274, NNT => 2.71186445003971e-07, NTA => 4.7856431471289e-08, NTC => 1.11665006766341e-07, NTG => 9.57128629425781e-08, NTT => 6.3808575295052e-08, ... TTN => 9.57128629425781e-08, TTT => 0.035068794178565, }, "N" => 3, } ./1.bliako.pl : done. #### $ diff 1.bliako.txt 2.bliako.txt >3.bliako.txt #### 285c285 < NT => ["A", 0.15, "C", 0.5, "G", 0.8, "T", 1], --- > NT => ["C", 0.35, "G", 0.65, "T", 0.85, "A", 1], #### $ ./1.predict.pl --input-state 84.state ./1.predict.pl : read state from '84.state', ngram-length is 2. ./1.predict.pl : starting with seed 'futile' ... futile were placed at once turned with anxious suspense I threw me when she might be guilty are soul have wandered with Project Gutenberg tm works based ./1.predict.pl : done. $ #### ./1.predict.pl : starting with seed 'reasoning' ... reasoning I paid a drunken ./1.predict.pl : done. $ #### friendship => ["and", 0.5, "You", 1], frightened => ["as", 0.5, "me", 1], frightful => [ "darkness", 0.111111111111111, "that", 0.222222222222222, "catalogue", 0.333333333333333, "selfishness", 0.444444444444444, "an", 0.555555555555556, "I", 0.666666666666667, "fiend", 0.777777777777778, "the", 0.888888888888889, "dreams", 1, ], #### $ ./1.predict.pl --input-state 84.state ./1.predict.pl : read state from '84.state', ngram-length is 2. ./1.predict.pl : starting with seed 'futile' ... futile were placed at once turned with anxious suspense I threw me when she might be guilty are soul have wandered with Project Gutenberg tm works based ./1.predict.pl : done. $ ./1.predict.pl --input-state 84.state ./1.predict.pl : read state from '84.state', ngram-length is 2. ./1.predict.pl : starting with seed 'reasoning' ... reasoning I paid a drunken ./1.predict.pl : done.