use strict; my $i = 2; my @dna = split //, 'CTCCGGATCTAT'; my $counter = 0; my $total = 0; while ($i < @dna) { if ($dna[$i] eq 'C') { $counter++; } elsif ($dna[$i] eq 'G') { $counter++; } $total++; $i += 3; } print "Found $counter G/C of $total elements at a 3-position\n";