I check the tmp file and it had 3599 lines, I printed out 
the command from the perl script and appened it to 
mysql -e and got 3599 records.
##</code><code>##

[reports@clarkkent]/home/reports/ftp/WSB(29): ./b.pl
load data infile '/tmp/WSB_urls_CDyy' into table tmpurl fields terminated by '|' (tstamp,url,count)
load data infile '/tmp/WSB_count_YAkf' into table tmpwsb fields terminated by '|' (tstamp,op100,op700,total)
lines: 72182
Done parsing: 1107730800: 1107734398
Done writing counts
Done writing urls
Done writing count DB
Done writing url DB
just done
[reports@clarkkent]/home/reports/ftp/WSB(30):