#! /usr/bin/perl $spectralfile = $ARGV[0]; $var1 = $ARGV[1]; $var2 = $ARGV[2]; $var3 = $ARGV[3]; $count = 0; open(SPEC, "$spectralfile") || die "ERROR: Can't open $spectralfile FILE for reading: $!\n"; foreach my $line () { chomp $line; #@array = split(/\t/,$line); @array = split(/\,/,$line); for($i = 0; $i<@array; $i++) { $count = $i++; if(($count != $var1) || ($count !=$var2) || ($count !=$var3)) { print "$count $var1 $var2 $var3\n"; print "$array[$i],\t"; } } print "\n"; }