use strict;
use warnings;
use Getopt::Declare;

# all reference variable names declared above this line

my $option_spec = qq{
Version: $VERSION

Description: 

  $SCRIPT_NAME reads a related set of Agilent ".dlog" files and generates the equivalent set of Genesis input files.

Options:

  -$SPLIT_MAP_FILE_PARM <$SPLIT_MAP_FILE_STRING>	Name of the split map file (no default)
  
  <${INPUT_FILE_OPT}:if>...	One or more input files to process (wildcards may be used) [required]
  
  -$FORCE_OUTPUT_OPT	Overwrite existing output files (default is to abort when an existing output file is encountered)
  
  -$OUTPUT_DIR_OPT <$OUTPUT_DIR_PARM>	Put output files in this directory, create the directory if it doesn't exist (default is current directory)

  -$OUTPUT_PREFIX_OPT 	Prefix for naming all output files (default: $OUTPUT_PREFIX_DEFAULT)
  
  -$OUTPUT_SUFFIX_OPT	Sufffix for naming all output files (default: $OUTPUT_SUFFIX_DEFAULT)
  
  -$VERBOSE_OPT	Enable verbose info

Example:

  Run $SCRIPT_NAME with split map RV900_split_map, verbose info, and use output prefix "RV900", and process all *.dlog files in the current directory:
  
  	$SCRIPT_NAME -$SPLIT_MAP_FILE_PARM RV900_split_map -$OUTPUT_PREFIX_OPT RV900 -$VERBOSE_OPT *.dlog
}

my $options = Getopt::Declare->new( $option_spec )
  or die "\n**** Error processing command line options, terminating $SCRIPT_NAME\n";