use strict;
use warnings;
use Data::Dumper;

my (%letters, $l);

while (<DATA>) {
    chomp; @_ = split //; $l++;
    $letters{$_[$_]}[$_]++ for (0..$#_);
}
for (keys %letters) {
    no warnings;
    $_ /= $l for @{$letters{$_}};
}

print Dumper(\%letters);

__DATA__
AAA
ATG
TTT
GTC