my $combinations2; # ... sub create_motif2 { #creates every possible 6-mer my $base2 = join ",", qw/a t c g/; my $L2 = 6; my $string2 = "{$base2}" x $L2; my $combinations2 = glob $string2; #print join ":", $combinations2; return join ":", $combinations2; } #### my $combinations2 = create_motif2();

Then pass $combinations2