the small rnas:CAGCGATGGGGATCAAGCTC
the sequnce thats being worked is CAGCGATGGGGATCAAGCTC
[blastall] WARNING: Unable to open TCV-jagger.fna.nin
[blastall] WARNING: : Unable to open TCV-jagger.fna.nin

------------- EXCEPTION: Bio::Root::Exception -------------
MSG: blastall call crashed: 256 /usr/bin/blastall -p  blastn  -d  "/var/common/CGI-BIN/TCV-jagger.fna"  -i  /tmp/Qs5Y9sAFLK  -o  /tmp/Rk2ttOzUih

STACK: Error::throw
STACK: Bio::Root::Root::throw /usr/local/share/perl/5.8.8/Bio/Root/Root.pm:328
STACK: Bio::Tools::Run::StandAloneBlast::_runblast /usr/local/share/perl/5.8.8/Bio/Tools/Run/StandAloneBlast.pm:759
STACK: Bio::Tools::Run::StandAloneBlast::_generic_local_blast /usr/local/share/perl/5.8.8/Bio/Tools/Run/StandAloneBlast.pm:706
STACK: Bio::Tools::Run::StandAloneBlast::blastall /usr/local/share/perl/5.8.8/Bio/Tools/Run/StandAloneBlast.pm:557
STACK: aligning.pl:34