my $qsub = qx/qsub -pe mpi 5 -t 1:$filecount:2 $bash/;
print "$qsub\n";

# check for sge to finish 
my $r;
my $fileoutcount = $filecount + 2;

while($r < $fileoutcount){
	
	opendir(DIR, "./out/BLAST/out") || die "$!";
	$r = 0;
	foreach (readdir DIR){
		$r++;
	}
	closedir DIR;
	sleep 500;
}