file name1:seq.txt ------------------- >ID_101 AGCTGAGTAGACTGA >ID_102 CGATGCTAGCTAGCTACAT >ID_103 ATCTTATCTTTTTATACC file name2:seq_updated.txt -------------------------- >ID_104 AATAGCTAGAAGGA >ID_105 AGATCGACTGAA >ID_106 ACTAGCTACGATATATTATATATAT my php page: ----------- $foo="ID_106" //ID to be searched. $cmd="perl split.pl $foo"; echo exec($cmd); my perl program: --------------- $bar=$ARGV[0]; print exec("grep -h -A 1 $bar *.txt"); #### what i was planning to do with the variable is this: ---------------------------------------------------- foreach $str(@array){ if($str=~/\w+/){@strs=split(//,$str); for($i=1;$i<=scalar(@strs);$i++){ print "$strs[$i] "; if($i%5==0){print"\n";} } } } } this is how my webpage result should look like: ----------------------------------------------- >ID_106 ACTAG CTACG ATATA TTATA TATAT