pointo1d@unforgiven:~$ perl tst.pl
PEP: >scaffold_2|GENSCAN_predicted_peptide_1|48_aa
PEP: MDRSHQIWDEKLMDQKCVLYPVCLWHEQESEMNWEAEKAERLRTEQKX
CDS: >scaffold_2|GENSCAN_predicted_CDS_1|144_bp
CDS: atggatcggagtcatcagatatgggatgagaagctgatggatcagaagtgcgtcctctac
CDS: cccgtctgcctctggcacgagcaggagagcgagatgaactgggaggctgagaaagctgag
CDS: aggctaaggactgaacagaaaggn
PEP: >scaffold_2|GENSCAN_predicted_peptide_2|51_aa
PEP: MRKNEGVDDADPLIEGMKEITLKDSATPEDKDQEDKQDERGEEIQEQPQEM
CDS: >scaffold_2|GENSCAN_predicted_CDS_2|156_bp
CDS: atgaggaagaatgagggtgttgatgatgcagatccactaatagaaggtatgaaggagatc
CDS: actctgaaagattcagcaactccagaagacaaggatcaagaagacaaacaagatgagaga
CDS: ggtgaagaaattcaagaacaacctcaagagatgtag
pointo1d@unforgiven:~$