#DynDom Version 1.5SRv3.1 31-Oct-08            Residue numbers are from PDB files
#/dyndom/home/dyndom/dyndomweb/dyndomtmp/3508DEA6ACEAEE548DA3C7D9F31F19B96
load inline
select all
color grey
background grey
# select fixed domain residues and colour blue
select    7-  33A,  73-  75A,  86- 216A
color [0  ,0  ,255]
# select moving domain residues and colour red
select   34-  72A,  76-  85A
color [255,0  ,0  ]
# select and colour arrow
select  219- 233A
color [0  ,0  ,255]
select  234- 247A
color [255,0  ,0  ]
# select and colour green residues involved in interdomain bending
# interdomain residues for pair    1
select   33-  34A,  75-  76A
color [0  ,255,0  ]
select   72-  73A,  76-  88A
color [0  ,255,0  ]
select all
wireframe off
backbone 100
select    1- 203B
backbone 50
colour white
select all
exit
#1st chain (A) is: /dyndom/home/dyndom/dyndomweb/dyndomtmp/3506A8DEA6ACEAEE548DA3C7D9F31F19B96pdb1dvrAal_A
#2nd chain (B) is: /dyndom/home/dyndom/dyndomweb/dyndomtmp/3506B8DEA6ACEAEE548DA3C7D9F31F19B96pdb2rgxBal_A
ATOM      1  N   ILE A   5      44.404  48.079 -17.638        0.00
ATOM      2  CA  ILE A   5      43.308  48.962 -17.213        0.00
ATOM      3  C   ILE A   5      42.765  48.682 -15.804        0.00
ATOM      4  O   ILE A   5      42.700  47.539 -15.374        0.00
ATOM      5  CB  ILE A   5      42.103  48.942 -18.246        0.00
ATOM      6  CG1 ILE A   5      41.137  50.111 -18.006        0.00
ATOM      7  CG2 ILE A   5      41.305  47.641 -18.136        0.00
ATOM      8  CD1 ILE A   5      41.574  51.451 -18.594        0.00
ATOM      9  N   ARG A   6      42.434  49.750 -15.083        0.00
ATOM     10  CA  ARG A   6      41.841  49.660 -13.751        0.00
ATOM     11  C   ARG A   6      40.684  50.624 -13.895        0.00
ATOM     12  O   ARG A   6      40.882  51.826 -14.083        0.00
ATOM     13  CB  ARG A   6      42.782  50.123 -12.627        0.00
ATOM     14  CG  ARG A   6      43.949  49.180 -12.317        0.00
ATOM     15  CD  ARG A   6      44.887  49.824 -11.317        0.00
ATOM     16  NE  ARG A   6      44.980  51.271 -11.515        0.00
ATOM     17  CZ  ARG A   6      46.115  51.934 -11.724        0.00