my $outfile = "$accession_$biotype";
####
my $outfile = '$accession_$biotype';
##
##
$outfile = "${accession}_${biotype}";
##
##
$outfile = $accession . '_' . $biotype;
##
##
use strict;
use warnings;
my $genfile = "c:\bemisia_coi.gb";
my $outfile;
my ($OUT, $IN);
print "Input: $genfile\n";
open $IN, '<', $genfile or die "cannot open $genfile: $!\n";
while (<$IN>) {
$_ = lc $_; #case insensitive
my @tokens = split m{//};
for my $token (@tokens) {
my ($accession) = ($token =~ /locus\s*([a-z]{8})/);
my ($biotype) = ($token =~ /biotype: ([a-z]{1})/);
my ($sequence) = ($token =~ /origin(\*+)\/\//);
$sequence =~ s/\s//g; #Removing spaces
$sequence =~ s/\d//g; #Removing numbers
$outfile = "${accession}_${biotype}";
open $OUT, '>' $outfile or die "cannot open $outfile: $!\n";
print "Printing to $outfile \n";
print $OUT, ">$outfile/n^^/n$sequence");
}
}