open(DBG, ">$some_log_file") or die; while (my $hit = $result->next_hit) { next unless ($v > 0); #print OUT $result->query_name().",".$result->query_description().",".$hit->name().","; if(defined($hit)) { my $debug_qry = $result->query_name(); my $debug_hit = $hit->name(); print DBG "$debug_qry\t$debug_hit\t$hit\n"; print OUT $result->query_name().",".$hit->name().","; } else { print OUT "\n"; } while (my $hsp = $hit->next_hsp) { #print OUT $hsp->score().",".$hsp->expect()."\n"; if(defined($hsp)) { my $debug_score = $hsp->score(); my $debug_expect = $hsp->expect(); my $debug_qry_desc = $result->query_description(); print DBG "$debug_score\t$debug_expect\t$debug_qry_desc\t$hsp\n"; print OUT $hsp->score().",".$hsp->expect().",".$result->query_description()."\n"; } else { print OUT "\n"; } } }