@SRR016086.1 308GJAAXX:2:1:911:957 length=36
CCCCCCCCCCACCCCCCCACACCACAAACACACCAC
+SRR016086.1 308GJAAXX:2:1:911:957 length=36
(IIIIIIII:&H68;I-3%/)*-/4$$')(0&$&,$
@SRR016086.2 308GJAAXX:2:1:916:735 length=36
AGATCAGTTTTGCACTCCACTTAAGTTTGTTCATAT
+SRR016086.2 308GJAAXX:2:1:916:735 length=36
I*IIIIIIIIIII%%CI()I2E6.I5;>+"=C+#%I
@SRR016086.3 308GJAAXX:2:1:908:956 length=36
CCCCCCCCCAACACAAAAACAAAATCCAAAACAATA
+SRR016086.3 308GJAAXX:2:1:908:956 length=36
II@III50I*9I+<00%.<9/,%-"$*2('&"&)""
####
use Bio::SeqIO;
my $file = $ARGV[0] || "test.fastq";
my $in = Bio::SeqIO->new(-file => $file , '-format' => 'fastq');
while ( my $seq = $in->next_seq() ) {
print "$seq->id\n";
}
####
my $INFILE_file_name = $file; # input file name
open ( INFILE, '<', $INFILE_file_name )
or croak "$0 : failed to open input $INFILE_file_name : $!\n";
my $count = 0;
my $seqlinec = 2;
while ( ) {
chomp;
# Trying to catch line 2 of each chunk..
if ( $seqlinc eq $count ) {
print "$_\n";
}
$seqlinec += 4;
}
close ( INFILE ); # close input file