and the second input file. 

>gi|134611|sp|P00441.2|_Homo_sapiens
MATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ
>gi|112419222|Xenopus_laevis
AMVKAVCVLAGSGDVKGVVRFEQQDD-GDVTVEGKIEGLTDGNHGFHIHVFGDNTNGCLSAGPHFNPQNKNHGSPKDADRHVGDLGNVTA-EGGVAQFKFTDPQISLKGERSIIGRTAVVHEKQDDLGKGGDDESLKTGNAGGRLACGVIGFCP
>gi|62858937|_Xenopus_(Silurana)_tropi...
-MVRAVCVLAGSGDVKGVVHFQQQDE-GPVTVEGKIYGLTDGKHGFHIHEFGDNTNGCISAGPHFNPESKTHGAPEDAVRHVGDLGNVTA-KDGVAEFKLTDSLISLKGNHSIIGRCAVVHEKEDDLGKGGNDESLKTGNAGGRLACGVIGLCQ
>gi|226372562|_Rana_catesbeiana
--MKAICVLKGSSEVTGVVRFEQEED-GPVTVTGQITGLTDGKHGFHIHTYGDNTDGCVSAGPHFNPQGKTHGGPDDEVRHVGDLGNVTS-AGGVADINIKDKLISLKGEHSIIGRTAVVHEKEDDLGKGGDNESLITGNAGGRLACGVIGICQ
>gi|116048074|_Scyliorhinus_torazame
--MKAICVLKGTGEVTGTVQFDQAGG-GPVTVKGSITGLTPGKHGFHVHAFGDNTNGCISAGPHYNPFLKTHGGPGDEERHVGDLGNVEANGDGVATFEIQDNQLHLSGERSIIGRTLVVHEKEDDLGKGEDEESTRTGNAGSRLACGVIGIAK
>gi|216963348|_Ctenopharyngodon_idella
-------------------YFEQEGEKSPVTLSGEITGLTAGKHGFHVHAFGDNTNGCISAGPHFNPYSKNHGGPTDSERHVGDLGNVIAGENGVAKIDIVDKMLTLSGPDSIIGRTMVIHEKEDDLGKGGNEESLKTGNAGGRLACGVIGITQ
>gi|226232347|_Pimephales_promelas
---------------------------------------------------------------HFNPHTQNHGGPTDSARHVGDLGNVTAGENGVAKIDIVDKMLTLSGQHSIIGRTMVIHEKEDDLGKGGNE---------------------
>gi|238801237|_Hemibarbus_mylodon
MAKKAVCVLKGTGEVTGTVFFEQETDGSPVKLSGTISGLTAGKHGFHVHVFGDNTNGCISAGPHFNPHNKNHGGPTDGDRHVGDLGNVTAGESGVAKIDIVDKMLTLSGQHSIIGRTMVIHEKEDDLGKGGNEESLKTGNAGGRLACGVIGITG
>gi|47227092|_Tetraodon_nigroviridis
MVIKAVCVLKGAGETSGTVYFEQQDEKAPVKLTGEIKGLTAGEHGFHVHAFGDNTNGCISAGPHYNPHNKTHAGPNDENRHVGDLGNVTAEADQIAKIDITDSVISLHGKFSIIGRTMVIHEKADDLGKGGNEESLKTGNAGGRLACGVIGITQ
>gi|225706520|_Osmerus_mordax
MVLKAVCVLKGTGEVTGTVFFEQEGDNGPVKLTGEISGLTPGEHGFHVHAFGDNTNGCISAGPHFNPHSKTHGGPTDDVRHVGDLGNVTAGQDNVAKISIQDKHLTLNGVHSIIGRTMVIHEKADDLGKGGNEESLKTGNAGGRLACGVIGITQ
>gi|185132317|_Oncorhynchus_mykiss
MAMKAVCVLKGTGEVTGTVFFEQEGADGPVKLIGEISGLAPGEHGFHVHAYGDNTNGCMSAGPHFNPHNQTHGGPTDAVRHVGDLGNVTAGADNVAKINIQDKMLTLTGPDSIIGRTMVIHEKADDLGKGGNEESLKTGNAGGRQACGVIGIAQ
>gi|56790262|_Danio_rerio
MVNKAVCVLKGTGEVTGTVYFNQEGEKKPVKVTGEITGLTPGKHGFHVHAFGDNTNGCISAGPHFNPHDKTHGGPTDSVRHVGDLGNVTADASGVAKIEIEDAMLTLSGQHSIIGRTMVIHEKEDDLGKGGNEESLKTGNAGGRLACGVIGITQ
>gi|185135289|_Salmo_salar
MALKAVCVLKGTGEVTGTVFFEQEGDGAPVKLTGEIAGLTPGEHGFHVHAFGDNTNGCMSAGPHFNPHNHTHGGPTDTVRHVGDLGNVTAAADSVAKINIQDEILSLAGPHSIIGRTMVIHEKADDLGKGDNEESRKTGNAGSRLACGVIGIAQ
>gi|134284932|_Carassius_auratus
---------------------------------------------FHVHAFGDNTNGCTSAGPHYNPHNQTHGGPTDSVRHVGDLGNV------------------------------------------------------------------
>gi|110180503|_Oryzias_javanicus
----------------------------------------PGEHGFHVHAFGDNTNGCISAGPHFNPYGKDHAGPTDEHRHVGDLGNVTANAENVAKLDFTDKVITLAGPHSIIGRTMVIHEKKDDLGKGGNEESLKTGNA-------------
>gi|229365862|_Anoplopoma_fimbria
MVVKAVCVLKGAGETSGVVHFEQEGDTAAVKLTGEIIGLTPGEHGFHVHAFGDNTNGCISAGPHFNPHNNTHAGPTDEQRHVGDLGNVTAGGDNIAKIDITDKIITLTGQHSIIGRTMVIHEKADDLGKGGNDESLKTGNAGARLACGVIGIAQ
>gi|226934254|_Dicentrarchus_labrax
-------------------------------------------------------------------------------RHVGDLGDVTAGGDNIAKIDITDKMLTLTGPLFIIGRTMVIHEKADDLGKGGNEESLKTG---------------
>gi|54873355|_Sebastes_schlegelii
---------------------------------GEIKGLTPGEHGFHVHAFGDNTNGCISAGPHFNPHGKDHAGPTDQERHVGDLGNVTAGAANVAKIDITDKMLTLTGPLSIIRRTMVIHEKKDDLGKGGNEESLKTGNAGG-----------
>gi|62550923|_Sparus_aurata
-------------------------------------------------------------------HGKNHGGPTDAERHVGDLGNVTAGADNVAKIDITDKMLTLSGPLSIIGRTMVIHEKVDDLGKGGNEE--------------------
>gi|27462182|_Pagrus_major
MVQKAVCVLKGAGETTGVVHFEQESESAPVTLKGEISGLTPDEHGFHVHAFGDNTNGCISAGPHFNPHNKNHAGPTDAERHVGDLGNVTAGADNVAKIDITDKMLTLNGPFSIIGRTMVIHEKADDLGKGGNEESLKTGNAGGRLACGVIGICQ
>gi|12733941|_Platichthys_flesus
-----------------------------------IAGLAPGEHGFHVHSFGDNTNGCMSAGPHFNPHGKNHAGPTDADRHVGDLGNVTAGADNVAEINISDKMLTLNGPNSIIGRTMVIHEKADDLGKGGNDESLKTGNA-------------
>gi|151549024|Paralichthys_olivaceus
------------------------------------------EHGFHVHAFGDNTNGCISAGPHFNPHGKNHAGPTDAERHVGDLGNVTAGKDNVAEINISDKIITLFGAHSIIGRTMVIHEKADDLGKGGNEESLKTGNAGARLACGVIG---
>gi|57908848|_Trematomus_bernacchii
---KAVCVFKGTGEASGTVFFEQENDSAPVKLTGEIKGLTPGEHGFHVHAFGDNTNGCISAGPHFNPHNKTHAGPTDEDRHVGDLGNVTAAADNVAKLNITDKMITLAGQYSIIGRTMVIHEKADDLGKGGNDESLKTGNAGGRLACGVIGIAQ
>gi|57908852|Chionodraco_hamatus
---KAVCVFKGAGEASGTVFFEQETDSCPVKLTGEIKGLTPGEHGFHVHAFGDNTNGCISAGPHFNPHNKTHAGPTDENRHVGDLGNVTAAADNVAKLDITDKMITLAGQYSIIGRTMVIHEKADDLGKGGNDESLKTGNAGGRLACGVIGIAQ
>gi|157152709|_Takifugu_obscurus
MAMKAVCVLKGAGDTSGTVYFEQENESAPVKLTGEIKGLTPGEHGFHVHAFGDNTNGCISAGPHYNPHNKTHAGPTDADRHVGDLGNVTAGADNIAKIDIKDSMLTLTGPYSIIGRTMVIHEKADDLGKGGNEESLKTGNAGGRLACGVIGITQ
>gi|67772081|_Siniperca_chuatsi
--------------------------------------FTPGEHGSHVHVFGDNTNGCISAGPHYNPHGKNHAGPNDAERHVGDLGNVTAGADNVAKIDITDKMPSLTGPYSIIGRTMVIHEKADDLGKGGNEESLKTGNAGGRLACGVIGITQ
>gi|40218091|_Oreochromis_mossambicus
MVLKAVCVLKGTGDTSGTVYFEQENDSAPVKLTGEIKGLTPGEHGFHVHAFGDNTNGCISAGPHFNPYNKNHGGPKDAERHVGDLGNVTAGADNVAKIEITDKVITLTGRDSIIGRTMVIHEKVDDLXKGGNEESLKTGNAGGRLACGVIGITQ
>gi|37542151|_Epinephelus_malabaricus
MVLKAVCVLKGAGETSGTVYFEQETDSAPVKLTGEIKGLTPGEHGFQVHAFGDNTNGCISAGPHFNPHNKHHAGPTDAERHVGDLGNVTAGGDNVAKIDITDKIITLNGPYSIIGRTMVIHEKADDLGTGGNEESLKTGNAGGRLACGVIGISQ
>gi|56785775|Epinephelus_coioides
MDLKAVCVLKGAGETSGTVYFEQESDSAPVKLTGEIKGLTPGEHGFHVHAFGDNTNGCISAGPHFNPHNKQHAGPTDADRHVGDLGNVTAGGDNVAKIDITDKMLTLNGPYSIIGRTMVIHEKADDLGRGGNDESLKTGNAGGRLACGVIGIAQ
>gi|47607437|_Oplegnathus_fasciatus
MVLKAVCVLKGAGETTGTVYFEQESDSAPVKLTGEIKGLTPGEHGFHVHAFGDNTNGCISAGPHFNPHNKNHAGPNDAERHVGDLGNVTAGADNVAKIDIKDHIITLTGPDSIIGRTMVIHEKADDLGKGGNEESLKTGNAGGRLACGVIGITQ
>gi|115392225|_Rachycentron_canadum
MVLKAVCVLKGAGETTGTVYFEQESDSAPVKVTGEIKGLTPGEHGFHVHAFGDNTNGCISAGPHFNPHNKNHAGPNDEERHIGDLGNVTAGADNVAKVDITDKMLTLNGPYSIIGRTMVIHEKADDLGKGGNEESLKTGNAGGRLACGVIGIAQ
>gi|224044145|_Taeniopygia_guttata
AAMRAVCVMQGEGAVKGVIHFEQQGT-GPVKVTGEITGLADGEHGFHVHEFGDNTNGCTSAGPHFNPEQKKHGGPSDAERHVGDLGNVTA-KGGVAQVSIQDSVISLSGPHCIIGRTMVVHERRDDLGRGGNDESLLTGNAGPRLACGVIGIAK
>gi|45384218|_Gallus_gallus
ATLKAVCVMKGDAPVEGVIHFQQQGS-GPVKVTGKITGLSDGDHGFHVHEFGDNTNGCTSAGAHFNPEGKQHGGPKDADRHVGDLGNVTA-KGGVAEVEIEDSVISLTGPHCIIGRTMVVHAKSDDLGRGGDNESKLTGNAGPRLACGVIGIAK
>gi|29373121|_Melopsittacus_undulatus
ATLKAVCVMKGEGPVQGVIHFQQQGN-GPVKVTGKISGLADGDHGFHVHEFGDNTNGCTSAGPHFNPEGKQHGGPSDAERHVGDLGNVTA-KGGVAEVAIEDSIISLSGPHSIVGRTMVVHEKCDDLGRGGDNESKLTGNAGPRLACGVIGIAK
>gi|89515076|_Bufo_gargarizans
-MVKAICVLKGNGPVHGIVGFNQDG--GEVTVKGTINGLTDGLHGFHIHVYGDNTNGCMSAGPHFNPHGKSHGAPEDEERHVGDLGNITS-KDGVAEFEFKDKIISLEGEHNIIGRTAVVHEKADDLGKGGDNESKVTGNAGGRLACGVIGICQ
>gi|226844835|_Trachemys_scripta_elegans
---------------------------------------------------------CTSAGAHFNPNGKNHGGPQDKERHVGDLGNVIANKDGVAEVSIKDSLISLTGPLSIIGRTMVVHEKEDDLGKGNN----------------------
>gi|265797|_Caretta_caretta
---------------------------ATVKAVCVLKGEDPVKEPVKGPVKEPVKGIIYFEQQGN-GPVTLSGSITGLTEGKHGFHVHEFGDNTNGCTSAGAHFNPPGKNHGGPQDNERHVGDLGNVIANKEGVAEVCIKDSLISLTGSQSIIG
>gi|126352669|_Equus_caballus
MALKAVCVLKGDGPVHGVIHFEQQQEGGPVVLKGFIEGLTKGDHGFHVHEFGDNTQGCTTAGAHFNPLSKKHGGPKDEERHVGDLGNVTADENGKADVDMKDSVISLSGKHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGIAP
>gi|126325231|_Monodelphis_domestica
MVLKAVCVLKGDGPVQGTIFFEQKQVGEPVELSGSIKGLAEGDHGFHVHEFGDNTQGCTSAGAHFNPHSKKHGGPTDEERHVGDLGNVTANKDGVATVSIKDSHIELSGPMSIIGRTMVVHEKADDLGKGGNAESEKTGNAGPRLACGVIGIAK
>gi|130497065|_Oryctolagus_cuniculus
MATKAVCVLKGDGPVEATIHFEQKGT-GPVVVKGRITGLTEGLHEFHVHQFGDNRQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTAGSNGVADVLIEDSVISLSGDMSVIGRTLVVHEKEDDLGKGGNDESTKTGNAGSRLACGVIGISP
>gi|74136167|_Macaca_mulatta
MAMKAVCVLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGIAQ
>gi|84579183|_Macaca_fascicularis
MAMKAVCVLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGYHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGIAH
>gi|197102620|_Pongo_abelii
MATKAVCVLKGDSPVKGIINFEQKERNGPVKVWGSIEGLTEGLHGFHVHEFGDNTVGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVVSVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ
>gi|223633904|_Ovis_aries
MATKAVCVLKGDGPVQGTIRFEAKGD--KVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHERPDDLGRGGNEESTKTGNAGGRLACGVIGIAP
>gi|194672519|_Bos_taurus
MATKAVCVLKGDGPVQGTIHFEAKGN--TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHSGPKDEERHVGDLGNVTADKNGVAVVDIVDSLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGIAK
>gi|2660692|_Cervus_elaphus
MATKAVCVMKGDGPVQGTIRFEAKGN--TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAKVDIVDSLISLSGEHSIIGRTMVVHEKPDDLGRGGNEESTKTGNARNRLACGVIGIAQ
>gi|39578718|_Cavia_porcellus
-ATKAVCVLKGDGPVQGIIHFEQKAN-GPVVVKGRITGLVEGKHGFHVHEFGDNTQGCTSAGPHFNPLSKKHGGPQDEERHVGDLGNVTAGADGVANVSIEDSLISLSGANSIIGRTMVVHEKPDDLGKGGNEESTKTGNAGSRLACGVIGIAQ
>gi|15082144|_Sus_scrofa
---KAVCVLKGDGPVQGTIYFELKGE-KTVLVTGTIKGLAEGDHGFHVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIG---
>gi|281348263|_Ailuropoda_melanoleuca
--------------------------------------------------------GCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTAGKDGVATVSLEDSLIALSGDHSIIGRTMVVHEKRDDLGKGGNEESTQTGNAGSRLACGVIGIAK
>gi|8394328|_Rattus_norvegicus
MAMKAVCVLKGDGPVQGVIHFEQKASGEPVVVSGQITGLTEGEHGFHVHQYGDNTQGCTTAGPHFNPHSKKHGGPADEERHVGDLGNVAAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGIAQ
>gi|45597447|_Mus_musculus
MAMKAVCVLKGDGPVQGTIHFEQKASGEPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTSAGPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGIAQ
>gi|55925004|_Mus_spretus
------------------------------------------------HQYGDNTQGCTSAGPHFNPHS-------------------------------------------------------------------------------------
END