7597478 NC_002192 Lactococcus lactis plasmid pWV01, complete sequence gi|7597478|ref|NC_002192.1||gnl|NCBI_GENOMES|15284[7597478] 7597478 1991/04/15 2008/04/09 520 1358 2178 live 7597489 NC_002193 Lactococcus lactis cremoris Cremoris Wg2 plasmid pWVO2, complete sequence gi|7597489|ref|NC_002193.1||gnl|NCBI_GENOMES|15285[7597489] 7597489 1993/05/10 2008/07/17 776 1359 3826 live ##

##

#!/usr/bin/perl
use strict;
use warnings;

use XML::LibXML;

  my $public_id = "-//NLM//DTD eSummaryResult, 29 October 2004//EN";
  my $system_id = "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSummary_041029.dtd";
  my $dtd = XML::LibXML::Dtd->new($public_id, $system_id);

  my $filename='/g/Washu_PopGen/test_gi_docsumms_delVer4.xml';


  my $parser = XML::LibXML->new();
  my $doc    = $parser->parse_file($filename);
  my $outfile ='/g/Washu_PopGen/test_gi_taxid_table.txt';
  $doc ->validate($dtd);

  open(OUTFILE,">",$outfile);

  print OUTFILE join("t", qw(Id TaxId Length Status ReplacedBy))."\n";

foreach my $DocSum ($doc->findnodes('/eSummaryResult/DocSum')) {

        my($Id) = $DocSum->findnodes('./Id');
        print OUTFILE $Id->to_literal, "\t";

        my($TaxId) = $DocSum->findnodes('./TaxId');
        print OUTFILE $TaxId->to_literal, "\t";

        my($Length) = $DocSum->findnodes('./Length');
        print OUTFILE $Length->to_literal, "\t";

        my($Status) = $DocSum->findnodes('./Status');
        print OUTFILE $Status->to_literal, "\t";

        my($ReplacedBy) = $DocSum->findnodes('./ReplacedBy');
        print OUTFILE $ReplacedBy->to_literal, "\n";

  }


##

##

No declaration for element eSummaryResult                                                                                                                                                                
No declaration for element DocSum                                                                                                                                                                        
No declaration for element Id                                                                                                                                                                            
No declaration for element Item                                                                                                                                                                          
No declaration for attribute Name of element Item                                                                                                                                                        
No declaration for attribute Type of element Item                                                                                                                                                        
No declaration for element Item                                                                                                                                                                          
No declaration for attribute Name of element Item                                                                                                                                                        
No declaration for attribute Type of element Item                                                                                                                                                        
No declaration for element Item                                                                                                                                                                          
No declaration for attribute Name of element Item                                                                                                                                                        
No declaration for attribute Type of element Item  

##

##