#!/usr/bin/perl use strict; use warnings; my %graph = ( read145404_1 => [qw/read231054_2 read250449_2/], read231054_2 => [qw/read359463_1 read691358_1 read937013_1/], read250449_2 => [qw/read359463_1 read691358_1 read937013_1/], ); my %node_to_int = convert_node_to_int(\%graph); my $routes = find_paths('read145404_1', 'read691358_1', \%graph); print "$_\n" for @$routes; sub find_paths { my ($beg, $end, $graph) = @_; my (@work, @solution); for (@{$graph->{$beg}}) { if ($_ eq $end) { push @solution, "$beg->$end"; next; } my $seen = ''; vec($seen, $node_to_int{$_}, 1) = 1; vec($seen, $node_to_int{$beg}, 1) = 1; push @work, ["$beg->$_", $_, $seen]; } while (@work) { my $item = pop @work; my ($path, $curr, $seen) = @$item; for my $node (@{$graph->{$curr}}) { my $bit = $node_to_int{$node}; next if vec($seen, $bit, 1); if ($node eq $end) { push @solution, "$path->$end"; next; } my $new_seen = $seen; vec($new_seen, $bit, 1) = 1; push @work, ["$path->$node", $node, $new_seen]; } } return \@solution; } sub convert_node_to_int { my ($graph) = @_; my ($n, %lookup); for my $node (keys %$graph) { $lookup{$node} = $n++ if ! defined $lookup{$node}; for (@{$graph->{$node}}) { $lookup{$_} = $n++ if ! defined $lookup{$_}; } } return %lookup; }