print "Please enter the cns file:\n"; chomp($t=); open(THE,$t) or die "Can not open file: $!\n"; @data=; close THE; $sequence=''; $end=0; foreach $line(@data){ if($line=~/^\@/){ $chro=$line; }elsif($line=~/^[a-zA-Z]/){ $sequence.=$line; }else{ $end++ } } $sequence=~s/\s*$//g; print $chro,"\n"; print $sequence,"\n";