use strict; use warnings; use Data::Dumper; use Bio::Tools::CodonTable; use Bio::Seq; my $dna = 'ATGAAAGGAACATCCATTTTATTCAAAGCACCTCCAAACCTGCAATCCTAAGTTCCAGGCAACTCAATCCCAAAAATCCACTGTAGATGCCCAAAGGCTGGGGTGTTCGGTCTTCAACATTTTTGCCTTTGTGGCTCCCAGTCAAGATAGAGCTGCACCAAGTCCAATTCCATTCCTCATCACAGATGATTTTTTCTACTTTAAGATCAGAACTATACAAGCTTCTTGCTTTGTGTCAGCATGCTGTTGTACCCATGGGCAAATTCTTAGGTAAGACAAAAACACAGTCCCAAGGGCAGGTAGTAATTTTTTCAGAAAAAGGTAAGGCAATCATTTATCTCAGTCTGCCCAGGACAGTCCCAATTTACACATGTATATTCTCCCAATCTGTAGGCTGTCTTTTCATTTTGTTGATTATTTCACTTAATTTTTTATTATTTATTTATTTTATAGAGACAGATCTCATTATGTTGCCCAGGGTGATCCTTGATCTCCTGGCCTCAAGTGATCCTCCAACCTTGGTCTCCCAAAGTGCTGGGATTACAGATGTGAACTACCACACCCAGTCAACGTGCAGAAGGTTTTCAGTTTGATGTAGTCTGATGTAGTCTCATGTATTTATCCTTCTTGTTGTTGCCTGAGCTTTTGGTGTGATATCCAAAAATATCATTGCCAAGATCAATATCAAGAAACTTTCCCCCTATGTTTCTTACAGAAATTTTATGGTTTCAGATTTTTCATCCATTTTGAGTATATTTGTGTGTATGATGTAAGATAAGGGTCCAGTCTCCCCAGTGTTGGATATCCAATTTTCATAACACCATTTATTGAAGAGATTATTCTTTCTCCACTGTGTTTTCTTGATGTCCTTGTCAAAAATTAGTTGACTTTTATATGCTTGGGTTTATTTCTGGGCTCTATTCTGTTTCATTGCTTTACATCTCTGTTTTCATGCCAGTGCCACAGTGTTTTGATTACTATAGCTTTGTAATATAATTTGAAATCAGAATGTGTAATACCTATAACTTTGTTTTTTGCTCTAAAGATTTATTTATTTATTTATTTTTGCCATTTCAGGTCTTTTGTGGTTTCATATGAATTTCAGAATTGTTTTTCCTATTTCTGTGAAAAATGCCATTGACATTTTGATAGGGATTGTGTTGAATCTATATATTGCTTTGGATAGTATGGATG'; my $seq_obj = Bio::Seq->new( -seq => $dna, -alphabet => 'dna' ); my $prot_obj = $seq_obj->translate(-complete => 1); print $prot_obj->seq, "\n"; #### MKGTSILFKAPPNLQS-completeVPGNSIPKIHCRCPKAGVFGLQHFCLCGSQSR-completeSCTKSNSIPHHR-completeFFLL-completeDQNYTSFLLCVSMLLYPWANS-completeVRQKHSPKGR-complete-completeFFQKKVRQSFISVCPGQSQFTHVYSPNL-completeAVFSFC-completeLFHLIFYYLFIL-completeRQISLCCPG-completeSLISWPQVILQPWSPKVLGLQM-completeTTTPSQRAEGFQFDVV-completeCSLMYLSFLLLPELLV-completeYPKISLPRSISRNFPPMFLTEILWFQIFHPF-completeVYLCV-completeCKIRVQSPQCWISNFHNTIY-completeRDYSFSTVFS-completeCPCQKLVDFYMLGFISGLYSVSLLYISVFMPVPQCFDYYSFVI-completeFEIRMCNTYNFVFCSKDLFIYLFLPFQVFCGFI-completeISELFFLFL-completeKMPLTF-complete-completeGLC-completeIYILLWIVWM #### Perl version v5.10.0 BioPerl 1.2.3