Microsoft Windows XP [Version 5.1.2600]
(C) Copyright 1985-2001 Microsoft Corp.
C:\Documents and Settings\user>cd d*
C:\Documents and Settings\user\Desktop>basecount.pl t.txt
"my" variable $motif masks earlier declaration in same scope at C:\Documents and
 Settings\user\Desktop\basecount.pl line 58.
 Total bases: 36
A= 9, T= 11, G= 6, C= 10
Errors (N)= 3
Enter a motif to count its number and lengths between motifs:
AT
I couldn't find it.
Number of motifs: 0.
The inter-motif nt Lengths are:
5
Use of uninitialized value $motif in pattern match (m//) at C:\Documents and Set
tings\user\Desktop\basecount.pl line 27, <STDIN> line 1.
C:\Documents and Settings\user\Desktop>