sub evalRna { my ($l, $r) = @_; my %bonds = (GU => 1, UG => 1, AU => 2, UA => 2, CG => 3, GC => 3); my $lu = "$bases[$l]$bases[$r]"; my $numBonds = $bonds{$lu} || die "Bad bond type '$lu' given $l, $r\n"; #### Bad bond type '5C' given 0, 21