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$ perl 1000161.pl
AGCCATGTAGCTAACTCAGGTTACATGGGGATGACCCCGCGACTTGGATTAGAGTCTCTT
...
PEPTIDE <>
ATG    ACC    CCG    CGA    CTT    GGA    TTA    GAG    TCT    CTT    
PEPTIDE <>

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$ cat 1000161.pl 
#!/usr/bin/perl -w
...
PEPTIDE <ATGGGGATGACCCCGCGACTTGGATTAGAGTCTCTT***>
ATG    ACC    CCG    CGA    CTT    GGA    TTA    GAG    TCT    CTT    
PEPTIDE <ATGACCCCGCGACTTGGATTAGAGTCTCTT***>